SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene16764

Length: 326 nt

UniGene Fasta

>biog2_v2.0_unigene16764
GAGCTTTTTGGATTGAAGTATTATGGCATGATTTATAATTTTCTCATCCTCAACTTGCCCATTGGCTCTTTCCTCTTCTCTGGCCTATTGGCTGGAATTTTGTACGATATTGAGGCGGCCAAGAGCCGTGGGATGAATGCAAGCCCGCTCCATGGTCTTTTCAGTGGCACTTACCTGTCAGGGCCGGACAACGGCAATAACTGTGTAGGTGCCCATTGCTACAGATTGGTCTTCTTGGTGATGGCCGGAGTTTGTCTTCTGGGTTTCGGCTTGGATGTTCTTTTGAGCTTCCGGACTAGAAATTTGTATTCAAATATACACAGATC

Ace file of the UniGene biog2_v2.0_unigene16764

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene366	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	major facilitator family protein [Arabidopsis thaliana] emb\|CAB45456.1\| putative protein [Arabidopsis thaliana] emb\|CAB80212.1\| putative protein [Arabidopsis thaliana] gb\|AEE86440.1\| major facilitator family protein [Arabidopsis thaliana]	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	protein	-	-	72%

Source	GOs	Term	Type	Identity
Blast2go	membrane	GO:0016020	Cellular Component	72%
Blast2go	mitochondrion	GO:0005739	Cellular Component	72%
Blast2go	response to karrikin	GO:0080167	Biological Process	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	Major facilitator superfamily	IPR011701	-	0.0	-
Sma3	Nodulin-like	IPR010658	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRH5

Fln msg: STOP codon was not found. Distance to subject end: 14 aas, your sequence is shorter than subject: 108 - 626

Fln protein: ELFGLKYYGMIYNFLILNLPIGSFLFSGLLAGILYDIEAAKSRGMNASPLHGLFSGTYLSGPDNGNNCVGAHCYRLVFLVMAGVCLLGFGLDVLLSFRTRNLYSNIHR

Protein Length: 109

Fln nts: GAGCTTTTTGGATTGAAGTATTATGGCATGATTTATAATTTTCTCATCCTCAACTTGCCCATTGGCTCTTTCCTCTTCTCTGGCCTATTGGCTGGAATTTTGTACGATATTGAGGCGGCCAAGAGCCGTGGGATGAATGCAAGCCCGCTCCATGGTCTTTTCAGTGGCACTTACCTGTCAGGGCCGGACAACGGCAATAACTGTGTAGGTGCCCATTGCTACAGATTGGTCTTCTTGGTGATGGCCGGAGTTTGTCTTCTGGGTTTCGGCTTGGATGTTCTTTTGAGCTTCCGGACTAGAAATTTGTATTCAAATATACACAGATC

Fln Alignment:

biogeco2_mira_c14458___ELFGLKYYGMIYNFLILNLPIGSFLFSGLLAGILYDIEAAKSRGMNASPLHGLFSGTYLSGPDNGNNCVGAHCYRLVFLVMAGVCLLGFGLDVLLSFRTRNLYSNIHR
B8LRH5__________________ELFGLKYYGMIYNFLILNLPIGSFLFSGLLAGILYDIEAAKSHKVNARPYPVLLSGIYPSELEDSNNCVGAHCYRLVFLVMAGVCLLGFGLDVLLSFRTRNLYSNIHR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain