SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene16759

Length: 448 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene16759
AGTTTGAACATATATGCAGTCACAAGCAGCAGTCCGCAGGACACTGATGTTCCCAGGAGAAGTCCTCACCGCCTTCTAAAAGAGCTAGAAGACATGAAAAGCCGGGAGCAATCTTCGAGGAAAGTTAAGGACAAGCTGCCACCCAAAACATCCATTCTCAAGACCCCCATGGATGACCAGAAGTTAGCACGGAGGTTCCTCAAGAGTCCCCAGTTATCGTTAAAATCATTCCCCCTGTTGAGCTCGTGCTTGCCCGCATCACCCCTTAGTGATATAGACAAGGCCTGGATGGAAGATAATCTGTTGGAGGCCAAACAAGCATTGGGTTATCCTCTGGAGACTTTAAGCAGCTTTGACGAGGATAGTCCCGCGGCTCATTTTGATACATTGCTCTACCTTGCATTCCAGCACGAGGAGAGTGAGAGGGCCAAGAATTCCAGGTATGTGA

Ace file of the UniGene biog2_v2.0_unigene16759 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18304	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9T4J0_RICCO	-	-	62%
FL-Next	tr=RNA binding protein, putative; Ricinus communis (Castor bean).	-	-	57%
Blast2go	protein	-	-	75%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribonuclease III domain	IPR000999	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9T4J0

Fln msg: Distance to subject end: 349 aas, your sequence is shorter than subject: 149 - 532

Fln protein: SLNIYAVTSSSPQDTDVPRRSPHRLLKELEDMKSREQSSRKVKDKLPPKTSILKTPMDDQKLARRFLKSPQLSLKSFPLLSSCLPASPLSDIDKAWMEDNLLEAKQALGYPLETLSSFDEDSPAAHFDTLLYLAFQHEESERAKNSRYV

Protein Length: 150

Fln nts: AGTTTGAACATATATGCAGTCACAAGCAGCAGTCCGCAGGACACTGATGTTCCCAGGAGAAGTCCTCACCGCCTTCTAAAAGAGCTAGAAGACATGAAAAGCCGGGAGCAATCTTCGAGGAAAGTTAAGGACAAGCTGCCACCCAAAACATCCATTCTCAAGACCCCCATGGATGACCAGAAGTTAGCACGGAGGTTCCTCAAGAGTCCCCAGTTATCGTTAAAATCATTCCCCCTGTTGAGCTCGTGCTTGCCCGCATCACCCCTTAGTGATATAGACAAGGCCTGGATGGAAGATAATCTGTTGGAGGCCAAACAAGCATTGGGTTATCCTCTGGAGACTTTAAGCAGCTTTGACGAGGATAGTCCCGCGGCTCATTTTGATACATTGCTCTACCTTGCATTCCAGCACGAGGAGAGTGAGAGGGCCAAGAATTCCAGGTATGTGA

Fln Alignment:

biogeco2_mira_c14450___SLNIYAVTSSSPQDTDVPRRSPHRLLKELEDMKSREQSSRKVKDKLPPKTSILKTPMDDQKLARRFLKSPQLSLKSFXXXXXXXXXXXXSDIDKAWMEDNLLEAKQALGYPLETLSSFDEDSPAAHFDTLLYLAFQHEESERAKNSRYV
B9T4J0__________________NLRVLAVAIDPPQPQELPQNSPQRLLKELAERKKITSPKKKV----PPKRFILKPPLDDKKLAQRFLNSPQLSLKQFPLLSSCLPSSRLNSVDKTWIDEYLLEAKQALGYSLEPSDNFGDDNPAKQFDTLLYLAFQHPSCERT-NARHV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain