SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene16667

Length: 247 nt

UniGene Fasta

>biog2_v2.0_unigene16667
CTGCAGCGGTTGATATCATCATATTGGTTCTGGTACTCGGTGCCTGTGGATTTCTTTTTACGCCTTATTTCAAGTACGTCTGTAATGAGGCTGCTGAGATTCTTCCTGCTACCTTTCTGTTGATCGGCGATATTATCTATCATGCACCTATAGCCTATGCGTCTGGGCGATCTTGATGTTTGTTCTTGTCATTGCGGCATGGGAAATCTACCAGTACAAATCGAGGAAATGCGAAAATCCACACTGC

Ace file of the UniGene biog2_v2.0_unigene16667

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11521	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ribosomal protein L34e-like protein [Arabidopsis thaliana] gb\|AAS76274.1\| At3g01170 [Arabidopsis thaliana] dbj\|BAD43016.1\| unknown protein [Arabidopsis thaliana] dbj\|BAF01163.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEE73619.1\| ribosomal protein	-	-	6.0e-30	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Blast2go	60s ribosomal protein	-	-	0.0	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytoplasmic part	GO:0044444	Cellular Component	0.0	63%
Blast2go	intracellular organelle	GO:0043229	Cellular Component	0.0	63%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L34Ae	IPR008195	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AD54

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 167 and 167, Distance to subject end: 102 aas, your sequence is shorter than subject: 82 - 227

Fln protein: AAVDIIILVLVLGACGFLFTPYFKYVCNEAAEILPATFLLIGDIIYHAPIAYASxxILMFVLVIAAWEIYQYKSRKCENPHC

Protein Length: 83

Fln nts: CTGCAGCGGTTGATATCATCATATTGGTTCTGGTACTCGGTGCCTGTGGATTTCTTTTTACGCCTTATTTCAAGTACGTCTGTAATGAGGCTGCTGAGATTCTTCCTGCTACCTTTCTGTTGATCGGCGATATTATCTATCATGCACCTATAGCCTATGCGTCTxxxxxxATCTTGATGTTTGTTCTTGTCATTGCGGCATGGGAAATCTACCAGTACAAATCGAGGAAATGCGAAAATCCACACTGC

Fln Alignment:

biogeco2_mira_c14338___AAVDIIILVLVLGACGFLFTPYFKYVCNEAAEILPATFLLIGDIIYHAPIAYASGAILMFVLVIAAWEIYQYKSRKCENPHC
D5AD54__________________ATVDIIILILVLGSCGVLLTPYLKYICHEAAEILPATFVMIGEVVYEAPLAYGSGAVLVIVTVIGAVEIYHCRSRKCENPRC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain