SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene16640

Length: 386 nt

UniGene Fasta

>biog2_v2.0_unigene16640
AGTGATGATGATATGGAAGATGCAAATGATAGCAAATCACTGGGAGATGATGGTGATGAAAATGAATCTGATTCAAAGCGCAGGAAGAAGGAAAACAATACAGTGGACATTGTGGCAGCATCTAGAGCTATTCGTGAACCACGTGTAGTGGTACAAACAACCAGTGAAATTGACATCCTTGATGATGGATATCGATGGCGCAAGTATGGGCAGAAGGTGGTGAAGGAAATCCAAATCCAAGGAGTTACTATAAATGCACAAATGCTGGATGTCCAGTGAGGAAACATGTGGAAAGAGCATCACATGATCCAAAAGCGGTGATCACAACATACGAAGGAAAGCAATAACCATGATGTGCCTGCTGCCCGAAACAGCAGCCATGATAA

Ace file of the UniGene biog2_v2.0_unigene16640

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10261	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	WRKY DNA-binding protein [Nicotiana tabacum]	-	-	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	67%
Blast2go	probable wrky transcription factor 2-like	-	-	61%

Source	GOs	Term	Type	Identity
Blast2go	transcription, DNA-dependent	GO:0006351	Biological Process	61%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	61%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	61%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	DNA-binding WRKY	IPR003657	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ABY6

Fln msg: Distance to subject end: 191 aas, your sequence is shorter than subject: 128 - 411

Fln protein: SDDDMEDANDSKSLGDDGDENESDSKRRKKENNTVDIVAASRAIREPRVVVQTTSEIDILDDGYRWRKYGQKVVKEIQIQGVTINAQMLDVQ*GNMWKEHHMIQKR*SQHTKESNNHDVPAARNSSHD

Protein Length: 129

Fln nts: AGTGATGATGATATGGAAGATGCAAATGATAGCAAATCACTGGGAGATGATGGTGATGAAAATGAATCTGATTCAAAGCGCAGGAAGAAGGAAAACAATACAGTGGACATTGTGGCAGCATCTAGAGCTATTCGTGAACCACGTGTAGTGGTACAAACAACCAGTGAAATTGACATCCTTGATGATGGATATCGATGGCGCAAGTATGGGCAGAAGGTGGTGAAGGAAATCCAAATCCAAGGAGTTACTATAAATGCACAAATGCTGGATGTCCAGTGAGGAAACATGTGGAAAGAGCATCACATGATCCAAAAGCGGTGATCACAACATACGAAGGAAAGCAATAACCATGATGTGCCTGCTGCCCGAAACAGCAGCCATGATAA

Fln Alignment:

biogeco2_mira_c14306___SDDDMEDA--NDSKSLGDDGDENESDSKRRKKENNTVDIVAASRAIREPRVVVQTTSEIDILDDGYRWRKYGQKVVKEIQIQGVTINAQMLDVQ*GNMWKEHHMIQKR*SQHTKE-------SNNHDVPAARNSSHD
D5ABY6__________________SDDDMEDGGTNDSKSLGDDGDENESDSKRRKKENNTVDIVAASRAIREPRVVVQTTSEIDILDDGYRWRKYGQKVVK----GNPNPRSYYKCTNAGCPVRKH---VERASHDPKAVITTYEGKHNHDVPAARNSSHD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain