SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene16609

Length: 350 nt

UniGene Fasta

>biog2_v2.0_unigene16609
CTTTGTGGTCTCACGGACACCTACTCAAGTTGCAAGCCACGCCCAAAAGTATTTCCTCAGGCTTAGTTCCGGGAACAAGGAGAAGAAAAGGTCTAGCATACATGATATAACAAGTGTCAATGGGGCAGAAATGAAGCAGCCTCATCTGCAGCAATCTTCTGCTATTACAAATTCTCATAATCCTTCTGCTGTTAGTCGCTCTTCAAATATGATGTATCCGTCATCACTGGGAGGAGCAACCATGGTAAATTCTATGGGATCTCCAACAGGGGGCAACCATATGATGCTCTCTCCCCATTCACTAGGTCCCTATTCTCAGAAAGGTATTGGTGGTCATTCGCCTGGGCATA

Ace file of the UniGene biog2_v2.0_unigene16609

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9515	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	MYB-like transcription factor DIVARICATA [Antirrhinum majus]	-	-	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	46%
Blast2go	protein	-	-	63%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Parathyroid hormone/parathyroid hormone-related protein	IPR001415	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	ABC-1	IPR004147	-	-
Sma3	Myb DNA-binding domain, plants	IPR006447	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3		IPR015609	-	-
Sma3	Myb-like domain	IPR017877	-	-
Sma3	SANT domain	IPR017884	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-
Sma3	DNA methylase, N-4 cytosine-specific, conserved site	IPR017985	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKB7

Fln msg: STOP codon was not found. Distance to subject end: 2 aas, your sequence is shorter than subject: 116 - 270

Fln protein: FVVSRTPTQVASHAQKYFLRLSSGNKEKKRSSIHDITSVNGAEMKQPHLQQSSAITNSHNPSAVSRSSNMMYPSSLGGATMVNSMGSPTGGNHMMLSPHSLGPYSQKGIGGHSPGH

Protein Length: 117

Fln nts: CTTTGTGGTCTCACGGACACCTACTCAAGTTGCAAGCCACGCCCAAAAGTATTTCCTCAGGCTTAGTTCCGGGAACAAGGAGAAGAAAAGGTCTAGCATACATGATATAACAAGTGTCAATGGGGCAGAAATGAAGCAGCCTCATCTGCAGCAATCTTCTGCTATTACAAATTCTCATAATCCTTCTGCTGTTAGTCGCTCTTCAAATATGATGTATCCGTCATCACTGGGAGGAGCAACCATGGTAAATTCTATGGGATCTCCAACAGGGGGCAACCATATGATGCTCTCTCCCCATTCACTAGGTCCCTATTCTCAGAAAGGTATTGGTGGTCATTCGCCTGGGCATA

Fln Alignment:

biogeco2_mira_c14260___FVVSRTPTQVASHAQKYFLRLSSGNKEKKRSSIHDITSVNGAEMKQPHLQQSSAITNSHNPSAVSRSSNMMYPSSLG-----GATMVNSMGSP---TGGNHMMLSP
B8LKB7__________________FVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVNGSDVSSP----QGPITGQGNQSSGSAGQPANHVSQPGIPSVYGATVGQPIAGPMVSAVGTPVMLPP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain