SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene16593

Length: 215 nt

UniGene Fasta

>biog2_v2.0_unigene16593
AATGTCCCTGGAAAATGGTATGCTTGGATCCTTCTTATCCTGTTCCAGCTTCTAATGCCAAATGTTTCACTCTTAGGACATCTCTGTGGCATTTTGTCTGGGTTTGCATATACCTATGGCTTGTTTAACTACTTCTTATTGGGATTAACATCATATACAGCTATCGAGAACTCTGCAATGCTTGCATGCTGTGTAAGGCGCCCTGGATTCATCGT

Ace file of the UniGene biog2_v2.0_unigene16593

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene298	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	rhomboid-like protein 15 [Arabidopsis thaliana] sp\|Q8LB17.2\|Y3846_ARATH RecName: Full=Uncharacterized protein At3g58460 gb\|AAM97052.1\| putative protein [Arabidopsis thaliana] gb\|AAN15505.1\| putative protein [Arabidopsis thaliana] gb\|AEE79784.1\| rhomboid-l	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	rhomboid family protein	-	-	72%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Serine endopeptidases.	EC:3.4.21.-	-	0.0	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	serine-type endopeptidase activity	GO:0004252	Molecular Function	0.0	72%
Blast2go	integral to membrane	GO:0016021	Cellular Component	0.0	72%

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal	IPR000449	-	-
Sma3	Peptidase S54, rhomboid	IPR002610	-	-
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	IPR015940	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A8E7

Fln msg: Distance to subject end: 168 aas, your sequence is shorter than subject: 71 - 410

Fln protein: NVPGKWYAWILLILFQLLMPNVSLLGHLCGILSGFAYTYGLFNYFLLGLTSYTAIENSAMLACCVRRPGFI

Protein Length: 72

Fln nts: AATGTCCCTGGAAAATGGTATGCTTGGATCCTTCTTATCCTGTTCCAGCTTCTAATGCCAAATGTTTCACTCTTAGGACATCTCTGTGGCATTTTGTCTGGGTTTGCATATACCTATGGCTTGTTTAACTACTTCTTATTGGGATTAACATCATATACAGCTATCGAGAACTCTGCAATGCTTGCATGCTGTGTAAGGCGCCCTGGATTCATCGT

Fln Alignment:

biogeco2_mira_c14240___NVPGKWYAWILLILFQLLMPNVSLLGHLCGILSGFAYTYGLFNYFLLGLTSYTAIENSAMLACCVRRPGFI
D5A8E7__________________NVPGKWYASILLILFQLLMPNVSLLGHLCGILSGFAYTYGLFNYFLLGLASYTAIESSAMLACCVRRPGFI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain