SustainPineDB

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Assembly info
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ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene16572

Length: 314 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene16572
GTATGGCCCTCTCATGCATCTCCGCCTCGGTGCTTCAGATATTCTGGTGATTTCAAGCCCGGAGCTCGCCATGGAAGTTCTTAAAACCAAAGACGCAGAATGGTCATCCAGGCCACTGGGTTCTGCTGGGAAATATATCGGTTTCGATTTCCATTCCCTTAATTTTTCCCCCAATGGTCCTCACTGGCGCCACTTAAGGAAAATATGTGCCACCCAGCTATTTTCTCCAGGCAGAATCAAGGCCCAGGCTCGAATCCGAAGAGAGGAGCTTCTGCGCGTGGTGGATCACATTTTCTCTGCATCTCAAAGAGGGG

Ace file of the UniGene biog2_v2.0_unigene16572 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3696	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Cytochrome P450 monooxygenase CYP92A1 n=3 Tax=Zea mays RepID=Q8VYA9_MAIZE	-	-	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	74%
Blast2go	elicitor-inducible cytochrome p450	-	-	61%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	61%
Blast2go	heme binding	GO:0020037	Molecular Function	61%
Blast2go	monooxygenase activity	GO:0004497	Molecular Function	61%
Blast2go	electron carrier activity	GO:0009055	Molecular Function	61%

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRC8

Fln msg: Distance to subject end: 353 aas, your sequence is shorter than subject: 104 - 553

Fln protein: YGPLMHLRLGASDILVISSPELAMEVLKTKDAEWSSRPLGSAGKYIGFDFHSLNFSPNGPHWRHLRKICATQLFSPGRIKAQARIRREELLRVVDHIFSASQRG

Protein Length: 105

Fln nts: GTATGGCCCTCTCATGCATCTCCGCCTCGGTGCTTCAGATATTCTGGTGATTTCAAGCCCGGAGCTCGCCATGGAAGTTCTTAAAACCAAAGACGCAGAATGGTCATCCAGGCCACTGGGTTCTGCTGGGAAATATATCGGTTTCGATTTCCATTCCCTTAATTTTTCCCCCAATGGTCCTCACTGGCGCCACTTAAGGAAAATATGTGCCACCCAGCTATTTTCTCCAGGCAGAATCAAGGCCCAGGCTCGAATCCGAAGAGAGGAGCTTCTGCGCGTGGTGGATCACATTTTCTCTGCATCTCAAAGAGGGG

Fln Alignment:

biogeco2_mira_c14216___YGPLMHLRLGASDILVISSPELAMEVLKTKDAEWSSRPLGSAGKYIGFDFHSLNFSPNGPHWRHLRKICATQLFSPGRIKAQARIRREELLRVVDHIFSASQR
B8LRC8__________________YGPVMHFRLGSANVIVVCSPEVAMEVLKTKDAEWSSRPPTLSGKYIGVDFHSLDFAPNGPHWRHLRKICATHIFSPARLRAQAHIRREEVLRMVDHIFAASQR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain