SustainPineDB

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Assembly info
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ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene16467

Length: 279 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene16467
GTATTCATCCAATGAAGCCCAAGGGATGAGTTCAACTGATTGTCGCCGAGGTTGTTGGGCATTTGGCTAGTTTCATGCCAGCAGGTGCCTGGTTCAAATACCCTTGGGTGAGGTGCACTAGTCTGCACCAACAGGTTTACTAAGGATGCCACCGCAAATGTGGGGGAAGCATCCCCTCTGTCTTCCCATGGAGTATTCATCCAATGAAAGATGCAATTTCCGAGCTCTTCTATGTACACACCATAATCTAGACAACAGTACGTCCATAGCGACTGCAGA

Ace file of the UniGene biog2_v2.0_unigene16467 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3688	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	Importin-alpha re-exporter, putative n=1 Tax=Ricinus communis RepID=B9SBF8_RICCO	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	55%
Blast2go	protein	-	-	74%

Source	GOs	Term	Type	Identity
Blast2go	cell proliferation	GO:0008283	Biological Process	74%
Blast2go	protein import into nucleus, docking	GO:0000059	Biological Process	74%
Blast2go	importin-alpha export receptor activity	GO:0008262	Molecular Function	74%
Blast2go	nuclear pore	GO:0005643	Cellular Component	74%
Blast2go	cytoplasm	GO:0005737	Cellular Component	74%

Source	InterPros	Term	Type	Identity
Sma3	Importin-beta, N-terminal	IPR001494	-	-
Sma3	CAS/CSE, C-terminal	IPR005043	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Exportin-1/Importin-beta-like	IPR013598	-	-
Sma3	Exportin/Importin, Cse1-like	IPR013713	-	-
Sma3	Formate C-acetyltransferase glycine radical, conserved site	IPR019777	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LM62

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 83 - 101

Fln protein: IHPMKPKG*VQLIVAEVVGHLASFMPAGAWFKYPWVRCTSLHQQVY*GCHRKCGGSIPSVFPWSIHPMKDAISELFYVHTII*

Protein Length: 84

Fln nts: GTATTCATCCAATGAAGCCCAAGGGATGAGTTCAACTGATTGTCGCCGAGGTTGTTGGGCATTTGGCTAGTTTCATGCCAGCAGGTGCCTGGTTCAAATACCCTTGGGTGAGGTGCACTAGTCTGCACCAACAGGTTTACTAAGGATGCCACCGCAAATGTGGGGGAAGCATCCCCTCTGTCTTCCCATGGAGTATTCATCCAATGAAAGATGCAATTTCCGAGCTCTTCTATGTACACACCATAATCTAG___ACAACAGTACGTCCATAGCGACTGCAGA

Fln Alignment:

biogeco2_mira_c14086___MPAGAWFKYPWVRCTSLHQQVY*GCHRKCGGSIPSV----FPW
B8LM62__________________VPAGAWFEFSWVRCISLHQWIYYKCHPRMWGIIPWVSLRGFPW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain