SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene16454

Length: 459 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene16454
GAAAGAGCTTTCGGAAAAATTGAAGAAATTGCCTCAGTTAAATAAATCTGCTGGTTCAAGTTATGTTGCAACACCATCTGTAGCACCTTCTCAGACATCAGGGACGTCCTCATTAATGGCATCAGCATCAGCATCAATTTCTGTTTCTTCAGCACCTACCATGTCAGCTGCAATGAAAGCTGCAATAATTGCATCAACCAGCGAGCCTGCGACTACAGCAGCAGGAAATATAAAACCTGTCACTGGGATGGCAAATCTTATGTCAGGGTATGCAAGTATTCCAAATTACGAAGCAGTGAAAAGAGCACAAGAGCTTGCAGCAAAACTAGGGTTTCATCAAGATCCTGAATTTATGCCATTGCTAAACATGTTTCCTGGACAATTGCCTGATCAATTTGGTACTGCTGGCCAGCAGAAACCTGCTAAAGCTCCTGTTCTCCGTCTTGATGCTCATGGTCG

Ace file of the UniGene biog2_v2.0_unigene16454 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2574	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Caldesmon multi-domain protein	-	-	4.0e-09	20%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	47%
Blast2go	u4 u6 small nuclear ribonucleoprotein prp3-like	-	-	2.8026e-45	46%

Source	InterPros	Term	Type	e value	Identity
Sma3	Pre-mRNA-splicing factor 3	IPR013881	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D7T479

Fln msg: Distance to subject end: 430 aas, your sequence is shorter than subject: 152 - 882

Fln protein: KELSEKLKKLPQLNKSAGSSYVATPSVAPSQTSGTSSLMASASASISVSSAPTMSAAMKAAIIASTSEPATTAAGNIKPVTGMANLMSGYASIPNYEAVKRAQELAAKLGFHQDPEFMPLLNMFPGQLPDQFGTAGQQKPAKAPVLRLDAHG

Protein Length: 153

Fln nts: GAAAGAGCTTTCGGAAAAATTGAAGAAATTGCCTCAGTTAAATAAATCTGCTGGTTCAAGTTATGTTGCAACACCATCTGTAGCACCTTCTCAGACATCAGGGACGTCCTCATTAATGGCATCAGCATCAGCATCAATTTCTGTTTCTTCAGCACCTACCATGTCAGCTGCAATGAAAGCTGCAATAATTGCATCAACCAGCGAGCCTGCGACTACAGCAGCAGGAAATATAAAACCTGTCACTGGGATGGCAAATCTTATGTCAGGGTATGCAAGTATTCCAAATTACGAAGCAGTGAAAAGAGCACAAGAGCTTGCAGCAAAACTAGGGTTTCATCAAGATCCTGAATTTATGCCATTGCTAAACATGTTTCCTGGACAATTGCCTGATCAATTTGGTACTGCTGGCCAGCAGAAACCTGCTAAAGCTCCTGTTCTCCGTCTTGATGCTCATGGTCG

Fln Alignment:

biogeco2_mira_c14070___KELSEKLKKLPQLNKSAGSSYVATPSVAPSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSEPATTAAGNIKPVTGMANLMSGYASIPNYEAVKRAQELAAKLGFHQDPEFMPLLNMFPGQLPDQFGTAGQQKPAKAPVLRLDAHG
D7T479__________________KELSEKLKKIPLLNKGASPSSDGSPQLKPKEEVTLPSSTTGKLLGSVPLTTATEAVSLVAMPST--STLPAAAAASVMPSASGVGALAGLTSMPNFEAVKRAQELAAKMGFRQDPEFAPLINMFPGQMPTD--VAVQQKPAKAPVLRLDALG

SSRs (tot: 1)

Start position	End position	Sequence	Length
324	341	TGATGC TGATGC TGATGC	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain