SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene16441

Length: 450 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene16441
TTAATCCCTGATTGTAGGTAGGAGGCTGCATTGGTACGGAGACATTTGAGCAACTATACGCTCAACACTGGTCCATTTGGGAGCATGCATGCAATTAAAGATCGAGAGACTTTTTCTGCTCTTGAGTGGTGGAACATGCATGGAGGGGGTACTCCACTTCTACAGAGTTTGGCATTGCGGGTGCTATCACAGGTGGTAAACACTTCTTCTGCAGAGAGGTGTTGGAGCTCTTATTCTTTCATCCACAGTGTTAAAAGGAACAGGTTGAGTTTAGACCGAGCAGAGAGCTTGGTTTATGTTCATTACAACTTGCGATTGTTGTCCCATTACTGTGAAGATGCAAAGTCTAATAAAGACTTGCTGATTTGGGACAAGAATCCAGAGGAGCCTAATTTGGAGGATGGAGTGCTGCGATTAGAGCAATTAGAGGATGCTCTTATTGAGGTATGT

Ace file of the UniGene biog2_v2.0_unigene16441 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9935	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	similar to beta-transducins (Pfam: PF00400, Score=71.7, E=1.5e-17, N=6) [Arabidopsis thaliana] emb\|CAB81036.1\| putative WD-repeat membrane protein [Arabidopsis thaliana]	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	42%
Blast2go	wd-repeat membrane protein	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	rRNA processing	GO:0006364	Biological Process	75%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	75%
Blast2go	small-subunit processome	GO:0032040	Cellular Component	75%
Blast2go	CUL4 RING ubiquitin ligase complex	GO:0080008	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Small-subunit processome, Utp21	IPR007319	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A8W4

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 105 aas, your sequence is shorter than subject: 150 - 478

Fln protein: LIPDCR*EAALVRRHLSNYTLNTGPFGSMHAIKDRETFSALEWWNMHGGGTPLLQSLALRVLSQVVNTSSAERCWSSYSFIHSVKRNRLSLDRAESLVYVHYNLRLLSHYCEDAKSNKDLLIWDKNPEEPNLEDGVLRLEQLEDALIEVC

Protein Length: 151

Fln nts: TTAATCCCTGATTGTAGGTAGGAGGCTGCATTGGTACGGAGACATTTGAGCAACTATACGCTCAACACTGGTCCATTTGGGAGCATGCATGCAATTAAAGATCGAGAGACTTTTTCTGCTCTTGAGTGGTGGAACATGCATGGAGGGGGTACTCCACTTCTACAGAGTTTGGCATTGCGGGTGCTATCACAGGTGGTAAACACTTCTTCTGCAGAGAGGTGTTGGAGCTCTTATTCTTTCATCCACAGTGTTAAAAGGAACAGGTTGAGTTTAGACCGAGCAGAGAGCTTGGTTTATGTTCATTACAACTTGCGATTGTTGTCCCATTACTGTGAAGATGCAAAGTCTAATAAAGACTTGCTGATTTGGGACAAGAATCCAGAGGAGCCTAATTTGGAGGATGGAGTGCTGCGATTAGAGCAATTAGAGGATGCTCTTATTGAGGTATGT

Fln Alignment:

biogeco2_mira_c14055___WWNMHGGGTPLLQSLALRVLSQVVNTSSAERCWSSYSFIHSVKRNRLSLDRAESLVYVHYNLRLLSHYCE---DAKSNK-----DLLIWDKNPEEPNLEDGVLRLEQLEDA
D5A8W4__________________WWENYGATTPILQKMAIRVLSQTCSSSGCERNWSVFEKIHTKKRNRLDTSCLNDLVYVHYNLRLWVKQLEIKIDARAISLDEIDTTAAWRVEVEEPVAENA---LDWLEDS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain