SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene16419

Length: 294 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene16419
CTATGCAATCCCATGGTCCCAGGGTACACTTGGGCTTCTGGTAGCAGCAGAGATCAAGCTCATACCAATAAAGGAATACATGAGAGTAACCTATACGCCTGCTAGGGGTAACCTCAGGGAGTTAGCCCAGGCCTACATTGATTCCTTGCACCCAGGGATGGAGATGAGTCCAAGGTCCCAGACTTTGTGGAGGCATGATATATAACCCCACAGAAGCCGTGCACATGACAGGAAGATATGCCTCCAAGGAAGAAGCGAAGCAAAGGGTAATGTTATCAACAGTGTTGGATGGTG

Ace file of the UniGene biog2_v2.0_unigene16419 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9917	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	cell elongation protein DIMINUTO [Arabidopsis thaliana] ref\|NP_850616.1\| cell elongation protein DIMINUTO [Arabidopsis thaliana] ref\|NP_001189937.1\| cell elongation protein DIMINUTO [Arabidopsis thaliana] sp\|Q39085.2\|DIM_ARATH RecName: Full=Delta(24)-ster	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	60%
Blast2go	cell elongation protein diminuto	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	Delta(24)-sterol reductase.	EC:1.3.1.72	-	0.0	89%

Source	KEGGs	Term	Identity
Blast2go	Steroid biosynthesis	00100	89%
Blast2go	Biosynthesis of terpenoids and steroids	01062	89%
Blast2go	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	89%
Blast2go	Biosynthesis of plant hormones	01070	89%
Blast2go	Metabolic pathways	01100	89%
Blast2go	Biosynthesis of secondary metabolites	01110	89%

Source	GOs	Term	Type	Identity
Blast2go	brassinosteroid biosynthetic process	GO:0016132	Biological Process	89%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	89%
Blast2go	response to light stimulus	GO:0009416	Biological Process	89%
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	89%
Blast2go	calmodulin binding	GO:0005516	Molecular Function	89%
Blast2go	delta24-sterol reductase activity	GO:0050614	Molecular Function	89%
Blast2go	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	89%
Blast2go	integral to membrane	GO:0016021	Cellular Component	89%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	89%
Blast2go	plasma membrane	GO:0005886	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	FAD-binding, type 2	IPR016166	-	-
Sma3	FAD-linked oxidase, FAD-binding, subdomain 2	IPR016168	-	-
Sma3	FAD linked oxidase, N-terminal	IPR006094	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAF3

Fln msg: Distance to subject end: 258 aas, your sequence is shorter than subject: 97 - 390

Fln protein: YAIPWSQGTLGLLVAAEIKLIPIKEYMRVTYTPARGNLRELAQAYIDSLHPGMEMSPRSQTLWRHDI*PHRSRAHDRKICLQGRSEAKGNVINSVGW

Protein Length: 98

Fln nts: CTATGCAATCCCATGGTCCCAGGGTACACTTGGGCTTCTGGTAGCAGCAGAGATCAAGCTCATACCAATAAAGGAATACATGAGAGTAACCTATACGCCTGCTAGGGGTAACCTCAGGGAGTTAGCCCAGGCCTACATTGATTCCTTGCACCCAGGGATGGAGATGAGTCCAAGGTCCCAGACTTTGTGGAGGCATGATATATAACCCCACAGAAGCCGTGCACATGACAGGAAGATATGCCTCCAAGGAAGAAGCGAAGCAAAGGGTAATGTTATCAACAGTGTTGGATGGTG

Fln Alignment:

biogeco2_mira_c14029___YAIPWSQGTLGLLVAAEIKLIPIKEYMRVTYTPARGNLRELAQAYIDSLHPGMEMSPRSQTLWRHDI*PHRSRAH-DRKICLQGRSEAKGNVINSVGW
D5AAF3__________________YAIPWSQGTLGLLVAAEIKLIPIKEYMRLTYMPARGNLRELAQAYIDSFAPRDGDQSKVPDFVESMIYTPTEAVHMTGRYASKEEAKKKGNVINSVGW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain