SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene16407

Length: 409 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene16407
CAAATCGATGGGCAGCAATAAGCATGAACTCCAGAACAGCTTTGGATTACCATTGCATGTTGCCAGGTTCAATAAGGCATGCCTCACAGAATGGGCTTGCTCAGATCCCTGTACATACATTTGGATTTGGGTCAGATCATGATTCTGCAACTATGCATTCCATAGCTGAGGCATCTGGAGGCACTTTTTCTTTCATAGAGACAGAGAATGTCATTCAAGATGCTTTTGCACAGTGTATTGGTGGGTTACTTAGTGTGATAATTCAAGATGTACAAGTGGAGATCACCTCTGCAAATTCGCAAGTACGACTGATTGCTATTCAAGCAGGTAGCTATGCAAGCAACATTATAGATGGAGGTCAACAAGGATCTGTAAAGATAGGAGACTTGTATGCAGAAGAGGAGAGGGA

Ace file of the UniGene biog2_v2.0_unigene16407 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10937	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9SVA9_RICCO	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	79%
Blast2go	protein binding	-	-	61%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	61%

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	von Willebrand factor, type A	IPR002035	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A7Z2

Fln msg: Distance to subject end: 246 aas, your sequence is shorter than subject: 128 - 350

Fln protein: MNSRTALDYHCMLPGSIRHASQNGLAQIPVHTFGFGSDHDSATMHSIAEASGGTFSFIETENVIQDAFAQCIGGLLSVIIQDVQVEITSANSQVRLIAIQAGSYASNIIDGGQQGSVKIGDLYAEEER

Protein Length: 129

Fln nts: CAAATCGATGGGCAGCAATAAGC_-_ATGAACTCCAGAACAGCTTTGGATTACCATTGCATGTTGCCAGGTTCAATAAGGCATGCCTCACAGAATGGGCTTGCTCAGATCCCTGTACATACATTTGGATTTGGGTCAGATCATGATTCTGCAACTATGCATTCCATAGCTGAGGCATCTGGAGGCACTTTTTCTTTCATAGAGACAGAGAATGTCATTCAAGATGCTTTTGCACAGTGTATTGGTGGGTTACTTAGTGTGATAATTCAAGATGTACAAGTGGAGATCACCTCTGCAAATTCGCAAGTACGACTGATTGCTATTCAAGCAGGTAGCTATGCAAGCAACATTATAGATGGAGGTCAACAAGGATCTGTAAAGATAGGAGACTTGTATGCAGAAGAGGAGAGGGA

Fln Alignment:

biogeco2_mira_c14016___QIPVHTFGFGSDHDSATMHSIAEASGGTFSFIETENVIQDAFAQCIGGLLSVIIQDVQVEITSANSQVRLIAIQAGSYASNIIDGGQQGSVKIGDLYAEEER
D5A7Z2__________________QIPVHTFGFGTDHDSASMHSISETSGGTFSFIETESIIQDAFAQCIGGLLSVVIQDMQVIVTCASSGVQLSAIQAGSYVGNILDDGQKGLVKIGDLYAEEER

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain