SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene16377

Length: 249 nt

UniGene Fasta

>biog2_v2.0_unigene16377
AAGCAAAACATCAGAGGTGACTGATTATAGAATGGAATACCACTTAACACCAAAAGATGGCGACCTCCATAGTCAAACAATGCTTTTAAATGGCGCAGTTTTGGAGTTAACTGAACACGGAGATATTCCTTCGTTAGATCCTGTCATGGTTGATGCTGGGCTACCTATTGCAGTAGCTCCTTTATCTATTGCTTTTGTTCCTTGCCTGGTCTGGAAATCTCTGCTTGTTTACAGTAGCAATGCTGTAGA

Ace file of the UniGene biog2_v2.0_unigene16377

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9918	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Heparanase-like protein 2 n=3 Tax=Andropogoneae RepID=B6U6D3_MAIZE	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	65%
Blast2go	heparanase-like protein 1-like	-	-	71%

Source	ECs	Term	Type	e value	Identity
Blast2go	Beta-glucuronidase.	EC:3.2.1.31	-	0.0	71%

Source	KEGGs	Term	Identity
Blast2go	Pentose and glucuronate interconversions	00040	71%
Blast2go	Starch and sucrose metabolism	00500	71%
Blast2go	Glycosaminoglycan degradation	00531	71%
Blast2go	Porphyrin and chlorophyll metabolism	00860	71%
Blast2go	Flavone and flavonol biosynthesis	00944	71%
Blast2go	Drug metabolism - other enzymes	00983	71%
Blast2go	Metabolic pathways	01100	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	beta-glucuronidase activity	GO:0004566	Molecular Function	0.0	71%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	0.0	71%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 79	IPR005199	-	-
Sma3	Nodulin-like	IPR010658	-	-
Sma3	Calmodulin-binding domain, plant	IPR012417	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LM26

Fln msg: STOP codon was not found. Distance to subject end: 6 aas, your sequence is shorter than subject: 82 - 381

Fln protein: SKTSEVTDYRMEYHLTPKDGDLHSQTMLLNGAVLELTEHGDIPSLDPVMVDAGLPIAVAPLSIAFVPCLVWKSLLVYSSNAV

Protein Length: 83

Fln nts: AAGCAAAACATCAGAGGTGACTGATTATAGAATGGAATACCACTTAACACCAAAAGATGGCGACCTCCATAGTCAAACAATGCTTTTAAATGGCGCAGTTTTGGAGTTAACTGAACACGGAGATATTCCTTCGTTAGATCCTGTCATGGTTGATGCTGGGCTACCTATTGCAGTAGCTCCTTTATCTATTGCTTTTGTTCCTTGCCTGGTCTGGAAATCTCTGCTTGTTTACAGTAGCAATGCTGTAGA

Fln Alignment:

biogeco2_mira_c13980___SKTSEVTDYRMEYHLTPKDGDLHSQTMLLNGAVLELTEHGDIPSLDPVMVDAGLPIAVAPLSIAFV
B8LM26__________________SGTSTDRNSRLEYHLTAKDGDLHSQTVLLNGNILNITPDGEIPSLSAVTVPANRPILVAPLSIAFV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain