SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene16376

Length: 262 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene16376
TATTTTGCAACAAGTCATCTTGATGTTGACTTAGCTGAAAAGGTTATAAAAGGTATTGTGGATGGTTGTCAGCAATCAGATTGTGCTCTTTTAGGTGGAGAGACAGCAGAAATGCCAGACTTTTATGCTGAAGGTGAATATGATCTTAGTGGTTTTGCTGTTGGTGTTGTCAAAAAGATGCTGTCATAGATGGAAAGACAATTTCTGTCGGTGATGTTCTAATTGGGCTTCCATCAAGCGGAGTCCACTCGAATGGATTTTC

Ace file of the UniGene biog2_v2.0_unigene16376 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8926	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Phosphoribosylformylglycinamidine cyclo-ligase n=1 Tax=Picea sitchensis RepID=D5ACW3_PICSI	-	-	89%
FL-Next	sp=Phosphoribosylformylglycinamidine cyclo-ligase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	phosphoribosylformylglycinamidine cyclo-ligase	-	-	90%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphoribosylformylglycinamidine cyclo-ligase.	EC:6.3.3.1	-	0.0	90%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	90%
Blast2go	Metabolic pathways	01100	90%
Blast2go	Biosynthesis of secondary metabolites	01110	90%

Source	GOs	Term	Type	Identity
Blast2go	'de novo' IMP biosynthetic process	GO:0006189	Biological Process	90%
Blast2go	copper ion binding	GO:0005507	Molecular Function	90%
Blast2go	ATP binding	GO:0005524	Molecular Function	90%
Blast2go	phosphoribosylformylglycinamidine cyclo-ligase activity	GO:0004641	Molecular Function	90%
Blast2go	mitochondrion	GO:0005739	Cellular Component	90%
Blast2go	chloroplast	GO:0009507	Cellular Component	90%

Source	InterPros	Term	Type	Identity
Sma3	AIR synthase-related protein	IPR000728	-	-
Sma3	AIR synthase-related protein, C-terminal	IPR010918	-	-
Sma3	Phosphoribosylformylglycinamidine cyclo-ligase	IPR004733	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ACW3

Fln msg: Overlapping hits, possible frame ERROR between 177 and 153, Distance to subject end: 148 aas, your sequence is shorter than subject: 87 - 357

Fln protein: YFATSHLDVDLAEKVIKGIVDGCQQSDCALLGGETAEMPDFYAEGEYDLSxxxxxxxxxxAVIDGKTISVGDVLIGLPSSGVHSNGF

Protein Length: 88

Fln nts: TATTTTGCAACAAGTCATCTTGATGTTGACTTAGCTGAAAAGGTTATAAAAGGTATTGTGGATGGTTGTCAGCAATCAGATTGTGCTCTTTTAGGTGGAGAGACAGCAGAAATGCCAGACTTTTATGCTGAAGGTGAATATGATCTTAGTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCTGTCATAGATGGAAAGACAATTTCTGTCGGTGATGTTCTAATTGGGCTTCCATCAAGCGGAGTCCACTCGAATGGATTTTC

Fln Alignment:

biogeco2_mira_c13979___YFATSHLDVDLAEKVIKGIVDGCQQSDCALLGGETAEMPDFYAEGEYDLSGxxxxxxxxDAVIDGKTISVGDVLIGLPSSGVHSNGF
D5ACW3__________________YFATSHLDVDLAEKVIKGIVDGCQQSDCVLLGGETAEMPDFYAEGEYDLSGxxxxxxxxNAVIDGKTISVGDVLIGLPSSGVHSNGF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain