SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene16368

Length: 439 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene16368
ATACCAGGAAGACTTCTGGGCAGGAGTGCAAGAGGTGTTCGCCATTACTGAACATTTGGTAAAGGTTCTTCGGTTGGTTGATGGTGAGAAGCCCGCAACGGACTATTTGTATGAGGCCATGGAAAGGGCCAAAGAAGCCATTCGGGCCTACTATGATGGTAAGGGAGATGATGGGTTTCAGAGACAACTCCTCCTATGGGGAGTGATTGATGAGCGATGGAACAACACACTCCATCATCCCATTCATGCTGTTAAGCTTTTCCTGAACCCTGCATTTTCTTACACATGTGGGTTTGATTTTGATGCTGAGATCATGGATGGATTCTTATCTTTTTGTCCAGAAGATGGTGAGATCTCCAGAACAGCATATAGAGATCTCTAAACAAATTGAGACATATAAGATGACAGGTGGCACATTTGGCTTTGAGATGGCTCCCAT

Ace file of the UniGene biog2_v2.0_unigene16368 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14138	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	DUF659 domain containing protein	-	-	58%
FL-Next	tr=DNA binding protein, putative; Ricinus communis (Castor bean).	-	-	44%
Blast2go	dna binding	-	-	59%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	59%
Blast2go	cell part	GO:0044464	Cellular Component	0.0	59%

Source	InterPros	Term	Type	Identity
Sma3	Neuraxin/MAP1B repeat	IPR000102	-	-
Sma3	Photosystem I PsaA/PsaB	IPR001280	-	-
Sma3	Pumilio RNA-binding repeat	IPR001313	-	-
Sma3	Glycoside hydrolase, family 1	IPR001360	-	-
Sma3	Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1	IPR001578	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, BED-type predicted	IPR003656	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	HAT dimerisation	IPR008906	-	-
Sma3	Histidine triad motif	IPR011151	-	-
Sma3		IPR011523	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3		IPR015706	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9RBQ7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 122 aas, your sequence is shorter than subject: 127 - 670

Fln protein: YQEDFWAGVQEVFAITEHLVKVLRLVDGEKPATDYLYEAMERAKEAIRAYYDGKGDDGFQRQLLLWGVIDERWNNTLHHPIHAVKLFLNPAFSYTCGFDFDAEIMDGFLSFCPEDGEISRTAYRDL*

Protein Length: 128

Fln nts: ATACCAGGAAGACTTCTGGGCAGGAGTGCAAGAGGTGTTCGCCATTACTGAACATTTGGTAAAGGTTCTTCGGTTGGTTGATGGTGAGAAGCCCGCAACGGACTATTTGTATGAGGCCATGGAAAGGGCCAAAGAAGCCATTCGGGCCTACTATGATGGTAAGGGAGATGATGGGTTTCAGAGACAACTCCTCCTATGGGGAGTGATTGATGAGCGATGGAACAACACACTCCATCATCCCATTCATGCTGTTAAGCTTTTCCTGAACCCTGCATTTTCTTACACATGTGGGTTTGATTTTGATGCTGAGATCATGGATGGATTCTTATCTTTTTGTCCAGAAGATGGTGAGATCTCCAGAACAGCATATAGAGATCTCTAAACAAATTGAGACATATAAGATGACAGGTGGCACATTTGGCTTTGAGATGGCTCCCAT

Fln Alignment:

biogeco2_mira_c13970___QEDFWAGVQEVFAITEHLVKVLRLVDGEKPATDYLYEAMERAKEAIRAYYDGKGDDGFQRQLLLWGVIDERWNNTLHHPIHAVKLFLNPAFSYTCGFDFDAEIMDGF
B9RBQ7__________________QDRFWKFAHEAVSISEPLIKILRIVDGDMPAMGYIYEVLERAKVSIKAYYKGIED----KYMPIWEIIDRRWNIQLHSPLHAAAAFLNPSIFYNQNFKIDLRMRNGF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain