SustainPineDB

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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene16358

Length: 335 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene16358
ATGGGGGAACTCTCCTGTTCTTCACAGCAGGCGAGAATCCTGTAAAGGAAGCAACTCCTTGACAAAGCAAGCGATCGAGAGCTTCTGGCAAACTAAGCGTGTGATAGAGGAGTTGTGCGCGCTGGCAGAATGGGCACTGGCTGAAAAAGAAGGCAGGCTGTTATCATTCAGACCAATGAAACAGAGGAAGAAATCGAAAACAAACACGAGGCTCAACAAACAATATCATTTGGCATCAAAGACTGGTGGACCAAGAGCTCGTATGCGTTCCTCAATCAGCCTCCATTGATGACGATGGAGGGAGTGCCCAAATACACATATCCAGCACAATACCT

Ace file of the UniGene biog2_v2.0_unigene16358 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17025	1/2
SustainPine v2.0	sp_v2.0_unigene29620	1/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Blast2go	unknown [Picea sitchensis]	-	-	8.82987e-18	59%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P036

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 23 aas, your sequence is shorter than subject: 111 - 152

Fln protein: MGELSCSSQQARIL*RKQLLDKASDRELLAN*ACDRGVVRAGRMGTG*KRRQAVIIQTNETEEEIENKHEAQQTISFGIKDWWTKSSYAFLNQPPLMTMEGVPKYTYPAQY

Protein Length: 112

Fln nts: ATGGGGGAACTCTCCTGTTCTTCACAGCAGGCGAGAATCCTGTAAAGGAAGCAACTCCTTGACAAAGCAAGCGATCGAGAGCTTCTGGCAAACTAAGCGTGTGATAGAGGAGTTGTGCGCGCTGGCAGAATGGGCACTGGCTGAAAAAGAAGGCAGGCTGTTATCATTCAGACCAATGAAACAGAGGAAGAAATCGAAAACAAACACGAGGCTCAACAAACAATATCATTTGGCATCAAAGACTGGTGGACCAAGAGCTCGTATGCGTTCCTCAATCAGCCTCCATTGATGACGATGGAGGGAGTGCCCAAATACACATATCCAGCACAATACCT

Fln Alignment:

biogeco2_mira_c13958___GIKDWWTKSSYAFLNQPPLMTME-GVPKYTYPAQY
A9P036__________________GIKDWWTKSNYAYLNQPPLTTIEPAKPKYKYTAQF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain