SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene16321

Length: 551 nt

UniGene Fasta

>biog2_v2.0_unigene16321
ATGGGGGAAGAGATGCATGAGAAGAGAACTCTTCAATTAAGAGAACTATTTCAGTCCCTCTCTGCTCGAGGAAGTAGCAGTCTTCCAACTAGGCAGCAGTATAGCCTGTTATCACCAGAAGATCTCACAGATACAGAGTGGTTCTATTTGACCAGCATGTCATATGATTTTCGACATTCTGTTGGATTACCCGGCATCACGCTAGAAAGAGGAAGCCCATTATGGCTCAGCAACGCAGGGGAAGCACATACCAAAACCTTCAAACGACATCTTCTTGCAAAGAGTTCTGGCATTCAGACAGTGGTGTGCCTTCCCTTCACAGACGGGGTGCTGGAGTTTGGTGTTACAGAGCTGGTTCATGAAGATGGTGATGTTATAGAAAATATCACGAGTTTTTTGTCGATCTGTTATGATCGCTATATTTCCAGGTAACAACTTCAAAGAAGGATTGGAAGAACGAAACTGCAACTATCAAATAATTGTTTTATTGTTTAATCTTACTGAGTTGTTTTATTGTTTGATCTTACTGAGTTGGTTAGATATAATGACTT

Ace file of the UniGene biog2_v2.0_unigene16321

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8732	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	transcription factor egl1	-	-	66%

Source	GOs	Term	Type	Identity
Blast2go	epidermal cell fate specification	GO:0009957	Biological Process	66%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	66%
Blast2go	protein binding	GO:0005515	Molecular Function	66%

Source	InterPros	Term	Type	Identity
Sma3		IPR001092	-	-
Sma3	Amino acid-binding ACT	IPR002912	-	-
Sma3	Helix-loop-helix DNA-binding	IPR011598	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ACI9

Fln msg: your sequence is shorter than subject: 144 - 222

Fln protein: MGEEMHEKRTLQLRELFQSLSARGSSSLPTRQQYSLLSPEDLTDTEWFYLTSMSYDFRHSVGLPGITLERGSPLWLSNAGEAHTKTFKRHLLAKSSGIQTVVCLPFTDGVLEFGVTELVHEDGDVIENITSFLSICYDRYISR*

Protein Length: 145

Fln nts: ATGGGGGAAGAGATGCATGAGAAGAGAACTCTTCAATTAAGAGAACTATTTCAGTCCCTCTCTGCTCGAGGAAGTAGCAGTCTTCCAACTAGGCAGCAGTATAGCCTGTTATCACCAGAAGATCTCACAGATACAGAGTGGTTCTATTTGACCAGCATGTCATATGATTTTCGACATTCTGTTGGATTACCCGGCATCACGCTAGAAAGAGGAAGCCCATTATGGCTCAGCAACGCAGGGGAAGCACATACCAAAACCTTCAAACGACATCTTCTTGCAAAGAGTTCTGGCATTCAGACAGTGGTGTGCCTTCCCTTCACAGACGGGGTGCTGGAGTTTGGTGTTACAGAGCTGGTTCATGAAGATGGTGATGTTATAGAAAATATCACGAGTTTTTTGTCGATCTGTTATGATCGCTATATTTCCAGGTAA___CAACTTCAAAGAAGGATTGGAAGAACGAAACTGCAACTATCAAATAATTGTTTTATTGTTTAATCTTACTGAGTTGTTTTATTGTTTGATCTTACTGAGTTGGTTAGATATAATGACTT

Fln Alignment:

biogeco2_mira_c13916___EEMHEKRTLQLRELFQSLSARGSSSLPTRQQYSLLSPEDLTDTEWFYLTSMSYDFRHSVGLPGITLERGSPLWLSNAGEAHTKTFKRHLLAKSSGIQTVVCLPFTDGVLEFGVTELVHEDGDVIENITSF
D5ACI9__________________EEMHEKRTLQLRELFESLSARGSSSLPTRQQYSLLSPEDLTDTEWFYLTCMSYDFRHSVGLPGITLERGNPMWLSNAGEAHTKIFKRHLLAKSSGIQTVVCLPFTDGVLEFGVTELVHEDRDLIEHITSF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain