SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene16297

Length: 306 nt

UniGene Fasta

>biog2_v2.0_unigene16297
GATATAGCAGAGCAGTCCATGGGGCAAGCAGGGGTGCAGACTCAGGCTGACTTTGTAGGCTGTTTGACGAATCTGTTCAAGGATATTGTCTTGGCAATTGAGGGGAATGATGAAATTCTCCGGAGTCTCTGTGGTGAAGATGGAATAGTCTATGCGATTTGGGAGCTGCACGAAGAATGTGATTCGAGAGGCACCGTGCTTCTAAAGAAGTACATGGATTACAGGAAACTAGCAAGATTAGCATCAGAGATTAGTTCGCAGAATAAGAATTTGATATCAGTTGTAGGGGCGCCAGAAGGGCCAGAT

Ace file of the UniGene biog2_v2.0_unigene16297

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8496	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: similar to pentatricopeptide (PPR) repeat-containing protein n=1 Tax=Vitis vinifera RepID=UPI0001984DF5	-	-	68%
FL-Next	sp=Conserved oligomeric Golgi complex subunit 4; Arabidopsis thaliana (Mouse-ear cress).	-	-	62%
Blast2go	uncharacterized protein	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	vesicle docking	GO:0048278	Biological Process	80%
Blast2go	exocytosis	GO:0006887	Biological Process	80%
Blast2go	cytoplasm	GO:0005737	Cellular Component	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	Conserved oligomeric Golgi complex, subunit 4	IPR013167	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8L838

Fln msg: Distance to subject end: 399 aas, your sequence is shorter than subject: 102 - 738

Fln protein: DIAEQSMGQAGVQTQADFVGCLTNLFKDIVLAIEGNDEILRSLCGEDGIVYAIWELHEECDSRGTVLLKKYMDYRKLARLASEISSQNKNLISVVGAPEGPD

Protein Length: 103

Fln nts: GATATAGCAGAGCAGTCCATGGGGCAAGCAGGGGTGCAGACTCAGGCTGACTTTGTAGGCTGTTTGACGAATCTGTTCAAGGATATTGTCTTGGCAATTGAGGGGAATGATGAAATTCTCCGGAGTCTCTGTGGTGAAGATGGAATAGTCTATGCGATTTGGGAGCTGCACGAAGAATGTGATTCGAGAGGCACCGTGCTTCTAAAGAAGTACATGGATTACAGGAAACTAGCAAGATTAGCATCAGAGATTAGTTCGCAGAATAAGAATTTGATATCAGTTGTAGGGGCGCCAGAAGGGCCAGAT

Fln Alignment:

biogeco2_mira_c13889___DIAEQSMGQAGVQTQADFVGCLTNLFKDIVLAIEGNDEILRSLCGEDGIVYAIWELHEECDSRGTVLLKKYMDYRKLARLASEISSQNKNLISVVGAPEGPD
Q8L838__________________ELMEQGLGQV------NFVGCLTNLFKDIVMAIEENDEILRGLCGEDGVAYAICELQEECDLRGSLILKKYMDFRKLAILASDINNSPNLNILPGGASEGPD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain