SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene16268

Length: 268 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene16268
ATGGGAGTTTCGCTAAGAATCTTTATCTCACCTGCCCTACCAGTACCACCGTTAACACCACCAAATTGGATATTCGCACTCCCAATTTGTTCGACAACAAATACTACGTCGATCTCCTCAACCGACAGACCCTCTTCACTTCTGACCAGACTCTTTACACCGACACTCGAACCCGCGACACTGTCATCAACTTTGCGGTGAATCAGACCCTCTTCTTTGAACAGTTTGTGCTCAGCATGCTCAAAATGGGTCAGCTGGATGTTCTCAC

Ace file of the UniGene biog2_v2.0_unigene16268 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23617	1/2
SustainPine v2.0	sp_v2.0_unigene60426	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	Peroxidase n=2 Tax=Picea RepID=Q5W5I2_PICAB	-	-	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	peroxidase	-	-	76%

Source	InterPros	Term	Type	Identity
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Peroxidase, active site	IPR019794	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A9C9

Fln msg: Distance to subject end: 34 aas, your sequence is shorter than subject: 88 - 351

Fln protein: GSFAKNLYLTCPTSTTVNTTKLDIRTPNLFDNKYYVDLLNRQTLFTSDQTLYTDTRTRDTVINFAVNQTLFFEQFVLSMLKMGQLDVL

Protein Length: 89

Fln nts: ATGGGAGTTTCGCTAAGAATCTTTATCTCACCTGCCCTACCAGTACCACCGTTAACACCACCAAATTGGATATTCGCACTCCCAATTTGTTCGACAACAAATACTACGTCGATCTCCTCAACCGACAGACCCTCTTCACTTCTGACCAGACTCTTTACACCGACACTCGAACCCGCGACACTGTCATCAACTTTGCGGTGAATCAGACCCTCTTCTTTGAACAGTTTGTGCTCAGCATGCTCAAAATGGGTCAGCTGGATGTTCTCAC

Fln Alignment:

biogeco2_mira_c13853___SFAKNLYLTCPTSTTVNTTKLDIRTPNLFDNKYYVDLLNRQTLFTSDQTLYTDTRTRDTVINFAVNQTLFFEQFVLSMLKMGQLDVL
D5A9C9__________________SFAKNLYLTCPTNTTVNTTNLDIRTPNVFDNKYYVDLLKEQTLFTSDQSLYTDTRTRDIVKSFALNQSLFFQQFVLSMLKMGQLDVL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain