SustainPineDB

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Assembly info
Unigenes
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ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene16246

Length: 477 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene16246
CTGAAGCATTTTCTAGTGGTCGCCTTGAGGATGATAAGGTTTCTGCATTGAACCAGCTGAAAAATATATTTAGCTTAGGAAATCGTGAAACTGAGCAAATTATGTTGGAAATTACAACCAAGGTGTATCGAAGAAGACTTTCTCAGGTTGTTAGTGGGGGTGATTTAGAGGCTGCACCTAGCAAAGCAGTCTTTCTTCAAAATCTTTGTGATGAGCTGCATTTTGATCCACAGAAAGCTAGTGAAGTGCATGAAGATATATACAGGCAAAAACTCCAGCAATGTGTTGCTGATGGCAATTTAAGTAAAGAAGATGATCATTTTCAATAATCTTGTGGTTACACATTTGCTTGCTGATATAAAGGGGGAGTCTCCCATTGTCTCTCCTGAACCAGCAAAGGAAGAGCCTAAACAAGATGAGGAGGAAAAGTGGAAGACACTTCAGACATGGAGGAAAACAAAGCCTAACAAGGAGCTT

Ace file of the UniGene biog2_v2.0_unigene16246 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9019	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	chloroplast inner envelope protein, 110 kD (IEP110) [Pisum sativum]	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	protein	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	protein import into chloroplast stroma	GO:0045037	Biological Process	79%
Blast2go	chloroplast organization	GO:0009658	Biological Process	79%
Blast2go	protein binding	GO:0005515	Molecular Function	79%
Blast2go	Tic complex	GO:0031897	Cellular Component	79%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LM18

Fln msg: Warning!, your query overlaps and the subject is separated, Distance to subject end: 321 aas, your sequence is shorter than subject: 159 - 1017

Fln protein: EAFSSGRLEDDKVSALNQLKNIFSLGNRETEQIMLEITTKVYRRRLSQVVSGGDLEAAPSKAVFLQNLCDELHFDPQKASEVHEDIYRQKLQQCVADGNLxxxxxIIFNNLVVTHLLADIKGESPIVSPEPAKEEPKQDEEEKWKTLQTWRKTKPNKEL

Protein Length: 160

Fln nts: CTGAAGCATTTTCTAGTGGTCGCCTTGAGGATGATAAGGTTTCTGCATTGAACCAGCTGAAAAATATATTTAGCTTAGGAAATCGTGAAACTGAGCAAATTATGTTGGAAATTACAACCAAGGTGTATCGAAGAAGACTTTCTCAGGTTGTTAGTGGGGGTGATTTAGAGGCTGCACCTAGCAAAGCAGTCTTTCTTCAAAATCTTTGTGATGAGCTGCATTTTGATCCACAGAAAGCTAGTGAAGTGCATGAAGATATATACAGGCAAAAACTCCAGCAATGTGTTGCTGATGGCAATTTAxxxxxxxxxxxxxxxATCATTTTCAATAATCTTGTGGTTACACATTTGCTTGCTGATATAAAGGGGGAGTCTCCCATTGTCTCTCCTGAACCAGCAAAGGAAGAGCCTAAACAAGATGAGGAGGAAAAGTGGAAGACACTTCAGACATGGAGGAAAACAAAGCCTAACAAGGAGCTT

Fln Alignment:

biogeco2_mira_c13828___EAFSSGRLEDDKVSALNQLKNIFSLGNRETEQIMLEITTKVYRRRLSQVVSGGDLEAAPSKAVFLQNLCDELHFDPQKASEVHEDIYRQKLQQCVADGNLSKEDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVKKMIIFNNLVVTHLLADIKGESPIVSPEPAKEEPKQDE----EEKWKTLQTWRKTKPNKEL
B8LM18__________________EAFSSGRLEDDKVAALNQLKNIFSLGNRETEQIMLEITTKVYRRRLSQVVGGGDLEAAPSKAVLLQNLCDELRFDPQKASEVHEDIYRQKLQQCVADGNLSKEDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLKKMIIFNNLVVTQLLADIKGESPIVSPEPAKEEPKQEEEDEDEDEWESLQTWRKTKPNKEL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain