SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene16237

Length: 340 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene16237
ATTCTAATATCTGTTCACAATGCCATTTTGCTTCTTGTTGTCATTTCCATTTTTGGATTTGTGGTGGGAGTTCTGGTCTGGAATGTTTGCTGGGGAAAAGATGCAGTTGTTGGGGTTTTGCTCGGTTATACGGATGCGGAGCTTGGGAGAGCCAAGGAGGGGCAGTATGTCAAGGTCACTGGGGTGGTCACTTGTGGAAGCGTTTCGCTTGAATCATCATATGAAAAGGTCTCTAAATGTGTATATACATCCACAAGTCTCTATGAGTACAGGGGATTGAATGAAAACCCAGCAAGTTCTAAGCAAAGGCGCTTCACTTGGGGTTTGAGATATTTAGAGA

Ace file of the UniGene biog2_v2.0_unigene16237 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene19972	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ubiquitin-specific protease family C19-related protein [Arabidopsis thaliana] sp\|Q9FZ45.1\|Y1686_ARATH RecName: Full=Uncharacterized membrane protein At1g16860 gb\|AAF99847.1\|AC051629_14 Unknown protein [Arabidopsis thaliana] gb\|AAK92824.1\| unknown protein	-	-	3.0e-31	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%
Blast2go	uncharacterized membrane protein at1g16860-like	-	-	1.54143e-44	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LR84

Fln msg: Distance to subject end: 134 aas, your sequence is shorter than subject: 113 - 510

Fln protein: ILISVHNAILLLVVISIFGFVVGVLVWNVCWGKDAVVGVLLGYTDAELGRAKEGQYVKVTGVVTCGSVSLESSYEKVSKCVYTSTSLYEYRGLNENPASSKQRRFTWGLRYLE

Protein Length: 114

Fln nts: ATTCTAATATCTGTTCACAATGCCATTTTGCTTCTTGTTGTCATTTCCATTTTTGGATTTGTGGTGGGAGTTCTGGTCTGGAATGTTTGCTGGGGAAAAGATGCAGTTGTTGGGGTTTTGCTCGGTTATACGGATGCGGAGCTTGGGAGAGCCAAGGAGGGGCAGTATGTCAAGGTCACTGGGGTGGTCACTTGTGGAAGCGTTTCGCTTGAATCATCATATGAAAAGGTCTCTAAATGTGTATATACATCCACAAGTCTCTATGAGTACAGGGGATTGAATGAAAACCCAGCAAGTTCTAAGCAAAGGCGCTTCACTTGGGGTTTGAGATATTTAGAGA

Fln Alignment:

biogeco2_mira_c13817___ILISVHNAXXXXXXXXXXXXXXXXXVWNVCWGKDAVVGVLLGYTDAELGRAKEGQYVKVTGVVTCGSVSLESSYEKVSKCVYTSTSLYEYRGLNENPASSKQRRFTWGLRYLE
B8LR84__________________LVATVHNAIFLIIIGSLFSVICFLFTWNICWGKRALLNFLASNKDADLRNARDGQYVKVTGVVTCGSVPLETSYQRVNRCIYSSTGLYEYRGWKAKPARVGHRLFTWGLRYLE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain