SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene16232

Length: 570 nt

UniGene Fasta

>biog2_v2.0_unigene16232
GATATCAACTAGCAGAAGCAGCAGGGGAAGGGTGCCGAGTAGGCTATGTGTCTACAGTCATTTGCTTTGCATCCGATCCTCAGCAACTCAAACAGGCCAGACAGGACCTGAACGACCTCATTAAAACTACTCGCTGTAATCCACTTCTAATTCGATTGGGATGGCATGATGCTGGAACATATGACAAGAACATTCAAGAGTGGCCAAAGTGTGGTGGAGCAAATGGGAGCTTGCACTTTGAGATAGAACTAAACCACAAAGCAAATGCTGGTCTTGTAAATGGATTGAAGCTCTTACAGCCCATCAAAGACAAGTATCCAAATATTACCTATGCAGATTTGTTCCAGTTAGCCAGCGCCACAGCTATTGAGGATGCTGGAGGCCCTGAAATTCCTATGAAATATGGGCGACTGGATGCACCTAGACCTGAAGATTGTCCACCAGAAGGAAAGCTCCCAGATGCTGGTCCTCCTTCACCAGCTGCTCATCTGCGTGATATCTTCTACAGAATGGGGTTGACAGATAAGGAAATTGTTGCATTATCAGGTGCGCACACTCTTGGAAGATCCA

Ace file of the UniGene biog2_v2.0_unigene16232

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15013	4/5
SustainPine v2.0	sp_v2.0_unigene64524	1/5

Source	Descriptions	Term	Type	Identity
AutoFact	Chloroplast thylakoid-bound ascorbate peroxidase n=2 Tax=Vigna unguiculata RepID=Q5QHW7_VIGUN	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	thylakoid-bound ascorbate peroxidase	-	-	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast stromal thylakoid	GO:0009533	Cellular Component	0.0	82%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	0.0	82%

Source	InterPros	Term	Type	Identity
Sma3	Plant ascorbate peroxidase	IPR002207	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P0R1

Fln msg: Distance to subject end: 121 aas, your sequence is shorter than subject: 189 - 334

Fln protein: YQLAEAAGEGCRVGYVSTVICFASDPQQLKQARQDLNDLIKTTRCNPLLIRLGWHDAGTYDKNIQEWPKCGGANGSLHFEIELNHKANAGLVNGLKLLQPIKDKYPNITYADLFQLASATAIEDAGGPEIPMKYGRLDAPRPEDCPPEGKLPDAGPPSPAAHLRDIFYRMGLTDKEIVALSGAHTLGRS

Protein Length: 190

Fln nts: GATATCAACTAGCAGAAGCAGCAGGGGAAGGGTGCCGAGTAGGCTATGTGTCTACAGTCATTTGCTTTGCATCCGATCCTCAGCAACTCAAACAGGCCAGACAGGACCTGAACGACCTCATTAAAACTACTCGCTGTAATCCACTTCTAATTCGATTGGGATGGCATGATGCTGGAACATATGACAAGAACATTCAAGAGTGGCCAAAGTGTGGTGGAGCAAATGGGAGCTTGCACTTTGAGATAGAACTAAACCACAAAGCAAATGCTGGTCTTGTAAATGGATTGAAGCTCTTACAGCCCATCAAAGACAAGTATCCAAATATTACCTATGCAGATTTGTTCCAGTTAGCCAGCGCCACAGCTATTGAGGATGCTGGAGGCCCTGAAATTCCTATGAAATATGGGCGACTGGATGCACCTAGACCTGAAGATTGTCCACCAGAAGGAAAGCTCCCAGATGCTGGTCCTCCTTCACCAGCTGCTCATCTGCGTGATATCTTCTACAGAATGGGGTTGACAGATAAGGAAATTGTTGCATTATCAGGTGCGCACACTCTTGGAAGATCCA

Fln Alignment:

biogeco2_mira_c13809___CRVGYVSTVICFASDPQQLKQARQDLNDLIKTTRCNPLLIRLGWHDAGTYDKNIQEWPKCGGANGSLHFEIELNHKANAGLVNGLKLLQPIKDKYPNITYADLFQLASATAIEDAGGPEIPMKYGRLDAPRPEDCPPEGKLPDAGPPSPAAHLRDIFYRMGLTDKEIVALSGAHTLGRS
A9P0R1__________________CRVRHVSTVICFASDPQQLKQARQDLNDLIKTTRCNPLLIRVGWHDAGTYDKNIQEWPKRGGANGSLHFEIELSHKANAGLVNALKLLRPIKDKYPNITYADLFQLASATAIEEAGGPVIPMKYGRLDAPKPEDCPPEGKLPDAGPPSPAAHLRDVFYRMGLTDKEIVALSGAHTLGRS

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
129	33	33		33	0.997753

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain