SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene16187

Length: 414 nt

UniGene Fasta

>biog2_v2.0_unigene16187
AACGAGACCTACAGCTAGCACTTGCAAATCCGGGACGCTCTGTTATTGACAAGCTTTTTGCATCCAAGTTTGTTGATACAATAGGACAGGAATGGATTTTCCTCACAGTTGGGGAGGCTGTACAAACTTGTTCTCGACGTTTGGAATATGATGTTTGAAGGAATGCAAGTGGACAATGTTGTAAAGTCCCTTTCAAGCATCAACACCAAAGTTTCCATAGTCTTTATAATTTTCTTTGCAACATCTCAATTCACAAGATGGGATTGTCATGTCCCTAACATTTTAGACATGTCAACCACCTTATTATCTTCTAATAATGTATAGGAGTGGATATGTGGTATACTCCTCACCTGCTTTCTCCTCTTCAGTTTCACTCTCTTACCAGCAATTTTTCTCTTCTACTTAGCACTCTTA

Ace file of the UniGene biog2_v2.0_unigene16187

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9377	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	putative high affinity sulfate transporter [Oryza sativa Japonica Group] gb\|EAZ42685.1\| hypothetical protein OsJ_27252 [Oryza sativa Japonica Group]	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	sulfate transporter	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	sulfate transport	GO:0008272	Biological Process	83%
Blast2go	transmembrane transport	GO:0055085	Biological Process	83%
Blast2go	secondary active sulfate transmembrane transporter activity	GO:0008271	Molecular Function	83%
Blast2go	integral to membrane	GO:0016021	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	Sulphate anion transporter	IPR001902	-	-
Sma3	Sulphate transporter/antisigma-factor antagonist STAS	IPR002645	-	-
Sma3		IPR002917	-	-
Sma3	tRNA modification GTPase TrmE	IPR004520	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3		IPR005289	-	-
Sma3	Sulphate transporter	IPR011547	-	-
Sma3	Heavy-metal-associated, conserved site	IPR017969	-	-
Sma3	Sulphate anion transporter, conserved site	IPR018045	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	GTP-binding protein TrmE, N-terminal	IPR018948	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PPQ5

Fln msg: your sequence is shorter than subject: 52 - 666

Fln protein: RDLQLALANPGRSVIDKLFASKFVDTIGQEWIFLTVGEAVQTCSRRLEYDV*

Protein Length: 53

Fln nts: AACGAGACCTACAGCTAGCACTTGCAAATCCGGGACGCTCTGTTATTGACAAGCTTTTTGCATCCAAGTTTGTTGATACAATAGGACAGGAATGGATTTTCCTCACAGTTGGGGAGGCTGTACAAACTTGTTCTCGACGTTTGGAATATGATGTTTGA___AGGAATGCAAGTGGACAATGTTGTAAAGTCCCTTTCAAGCATCAACACCAAAGTTTCCATAGTCTTTATAATTTTCTTTGCAACATCTCAATTCACAAGATGGGATTGTCATGTCCCTAACATTTTAGACATGTCAACCACCTTATTATCTTCTAATAATGTATAGGAGTGGATATGTGGTATACTCCTCACCTGCTTTCTCCTCTTCAGTTTCACTCTCTTACCAGCAATTTTTCTCTTCTACTTAGCACTCTTA

Fln Alignment:

biogeco2_mira_c13750___RDLQLALANPGRSVIDKLFASKFVDTIGQEWIFLTVGEAVQTCSRRLEYDV
C0PPQ5__________________RDLQLALANPGRAVIDKLFSSKFVDTIGQEWIFLTVGEAVQTCSRRLKFDV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain