SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene16170

Length: 326 nt

UniGene Fasta

>biog2_v2.0_unigene16170
ATGGGTGATACGACCAGGGCTTCAATGCCGGTGCAAATCTGTTGCTGAAATGCTTGGACAGATGAAGTCGAAAAGCCCTCAGATGGCATGCGAGTTGGGGTATAAAGAAACATAATAGATAGAGAAGACTGCTGCCTGGTGCCATGTTGATGGTCACGTGCAGGTGAACAGAAGACAGGTTGCCATGAAATGAATTTGAAAATTGGGGAGTGGTGGGTTTATGATTTTTTTTCTGATGATTACAGGGAATTTAGCACGCAGTTGTGTGTCCCATTCTTTTGAGTCAATGATCATGGCCTTTGGCTCAGTATTATTATGCATGCTTC

Ace file of the UniGene biog2_v2.0_unigene16170

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8307	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	HNH endonuclease domain-containing protein [Arabidopsis thaliana] gb\|AAF27111.1\|AC011809_20 Unknown protein [Arabidopsis thaliana] dbj\|BAC42704.1\| unknown protein [Arabidopsis thaliana] gb\|AAO64117.1\| unknown protein [Arabidopsis thaliana] gb\|AEE29745.1\|	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	hnh endonuclease domain-containing protein	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	endonuclease activity	GO:0004519	Molecular Function	83%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	83%
Blast2go	chloroplast	GO:0009507	Cellular Component	83%

Source	InterPros	Term	Type	e value	Identity
Sma3	HNH endonuclease	IPR002711	-	0.0	-
Sma3	HNH nuclease	IPR003615	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NLU3

Fln msg: your sequence is shorter than subject: 38 - 166

Fln protein: WVIRPGLQCRCKSVAEMLGQMKSKSPQMACELGYKET*

Protein Length: 39

Fln nts: ATGGGTGATACGACCAGGGCTTCAATGCCGGTGCAAATCTGTTGCTGAAATGCTTGGACAGATGAAGTCGAAAAGCCCTCAGATGGCATGCGAGTTGGGGTATAAAGAAACATAA___TAGATAGAGAAGACTGCTGCCTGGTGCCATGTTGATGGTCACGTGCAGGTGAACAGAAGACAGGTTGCCATGAAATGAATTTGAAAATTGGGGAGTGGTGGGTTTATGATTTTTTTTCTGATGATTACAGGGAATTTAGCACGCAGTTGTGTGTCCCATTCTTTTGAGTCAATGATCATGGCCTTTGGCTCAGTATTATTATGCATGCTTC

Fln Alignment:

biogeco2_mira_c13731___VIRPGLQCRCKSVAEMLGQMKSKSPQMACELGYKET
A9NLU3__________________VMRPGLQCRCKSVAEMLGQLKSKSPQMACELPYKET

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain