SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene16132

Length: 387 nt

UniGene Fasta

>biog2_v2.0_unigene16132
CAGCAGGAGAATTCCCCCAAGCCTTGTTCTTCTTCTATTCCCCGTCTAGTCTAAGTCTTTCGTAAGTCTTCGTTGTAAATTATTGTAGTAATTGGCAGTACCACTCTCAGTCCATGGATGATTCCACCAAATACAGTACCACCACTACAATCAAGGCCCAATCTCTCTGTGGGGCATTTGCCCATGTTTGCATTATGGAATGAATGAATGTGATTTGGCTGTAAAATACTAGCGGAAGTAATTATCTCTGTGGAGATTGATGCACCTGAGTGATGTGTATAACCTGAAAAATCAATTTTGCATTCATCTCATTTTGAATATCGCAGAGTAACAACAGCGAGCTGGATCGATATGTGCAGCTCGTTGAATTTTGTCAGTGTTCTGAGA

Ace file of the UniGene biog2_v2.0_unigene16132

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene359	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	AINTEGUMENTA-like protein n=1 Tax=Pinus thunbergii RepID=Q76H96_PINTH	-	-	92%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	ap2 domain-containing transcription factor	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	2-alkenal reductase.	EC:1.3.1.74	-	0.0	79%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	79%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	79%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	79%
Blast2go	DNA binding	GO:0003677	Molecular Function	79%
Blast2go	2-alkenal reductase [NAD(P)] activity	GO:0032440	Molecular Function	79%
Blast2go	nucleus	GO:0005634	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	AP2/ERF domain	IPR001471	-	-
Sma3	Zein-binding domain	IPR007656	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9J7

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 69 - 97

Fln protein: QQENSPKPCSSSIPRLV*VFRKSSL*IIVVIGSTTLSPWMIPPNTVPPLQSRPNLSVGHLPMFALWNE*

Protein Length: 70

Fln nts: CAGCAGGAGAATTCCCCCAAGCCTTGTTCTTCTTCTATTCCCCGTCTAGTCTAAGTCTTTCGTAAGTCTTCGTTGTAAATTATTGTAGTAATTGGCAGTACCACTCTCAGTCCATGGATGATTCCACCAAATACAGTACCACCACTACAATCAAGGCCCAATCTCTCTGTGGGGCATTTGCCCATGTTTGCATTATGGAATGAATGA___ATGTGATTTGGCTGTAAAATACTAGCGGAAGTAATTATCTCTGTGGAGATTGATGCACCTGAGTGATGTGTATAACCTGAAAAATCAATTTTGCATTCATCTCATTTTGAATATCGCAGAGTAACAACAGCGAGCTGGATCGATATGTGCAGCTCGTTGAATTTTGTCAGTGTTCTGAGA

Fln Alignment:

biogeco2_mira_c13686___GSTTLSPWMIPPNTVPPLQSRPNLSVGHLPMFALWNE
D5A9J7__________________GSTTLSPWMIPPNTVQPLQSRPNLSVGHLPMFALWNE

SSRs (tot: 1)

Start position	End position	Sequence	Length
198	210	GAAT GAAT GAAT G	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain