SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene16129

Length: 565 nt

UniGene Fasta

>biog2_v2.0_unigene16129
GAGCACCATGTGCCTATGCCAAGTGCACCTGATCCAGAAATGCTTGTATCAAGGGAGACGCTTTTGGAGAGCTACCTCACTGATCCTCGAGTCCCCATGTCCAAAAGGAATAGCCTTGCAAAAAGAAACATTGCTCCATGGCCTATAGAGATTCGTTTGTGTGATACTTATGATTATGAAGACTCCAATATTCCTGCTACACGAGAACCAAGACAGAAATATTGGCTAAGGGCACGAGGAAAACTCTCAGATGACCTGGCTTTGCATCGGTGTGTAGCTGCATTTGCCTCAGATCTTATTTTCTGGACACCAGCCTTCTTCCACATCGCAGAAAGGGTGAAAAAATATCATCACTAAGTCTAGATCACTCAATGTGGTTCCACCAGCCTTTCAAGGCTGATGAATGGCTGCTGTTTGCGATGGAAAGCCCAATTGCAAGTAATGGTCGTGGATTTAACATTGGTCGTATGTACACAAAATCTGGAGAGCTTGTAGTGTCAGTGGCACAAGAAGGATTAATCCGAAGAAAGATACAGCGAAGAGCAAGACTATAATTAGATGGAGA

Ace file of the UniGene biog2_v2.0_unigene16129

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1839	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	palmitoyl-CoA hydrolase [Arabidopsis thaliana] gb\|AEE27325.1\| palmitoyl-CoA hydrolase [Arabidopsis thaliana]	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	acyl-coenzyme a thioesterase 8-like	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	acyl-CoA metabolic process	GO:0006637	Biological Process	71%
Blast2go		GO:0016291	Molecular Function	71%
Blast2go	peroxisome	GO:0005777	Cellular Component	71%

Source	InterPros	Term	Type	Identity
Sma3	Acyl-CoA thioesterase	IPR003703	-	-
Sma3	Cyclic nucleotide-binding domain	IPR000595	-	-
Sma3	Cyclic nucleotide-binding, conserved site	IPR018488	-	-
Sma3	RmlC-like jelly roll fold	IPR014710	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVP7

Fln msg: Overlapping hits, possible frame ERROR between 303 and 285, your sequence is shorter than subject: 185 - 431

Fln protein: EHHVPMPSAPDPEMLVSRETLLESYLTDPRVPMSKRNSLAKRNIAPWPIEIRLCDTYDYEDSNIPATREPRQKYWLRARGKLSDDLALHRCVAAxxxxxxxxDTSLLPHRRKGEKISSLSLDHSMWFHQPFKADEWLLFAMESPIASNGRGFNIGRMYTKSGELVVSVAQEGLIRRKIQRRARL*

Protein Length: 186

Fln nts: GAGCACCATGTGCCTATGCCAAGTGCACCTGATCCAGAAATGCTTGTATCAAGGGAGACGCTTTTGGAGAGCTACCTCACTGATCCTCGAGTCCCCATGTCCAAAAGGAATAGCCTTGCAAAAAGAAACATTGCTCCATGGCCTATAGAGATTCGTTTGTGTGATACTTATGATTATGAAGACTCCAATATTCCTGCTACACGAGAACCAAGACAGAAATATTGGCTAAGGGCACGAGGAAAACTCTCAGATGACCTGGCTTTGCATCGGTGTGTAGCTGCAxxxxxxxxxxxxxxxxxxxxxxxxGACACCAGCCTTCTTCCACATCGCAGAAAGGGTGAAAAAATATCATCACTAAGTCTAGATCACTCAATGTGGTTCCACCAGCCTTTCAAGGCTGATGAATGGCTGCTGTTTGCGATGGAAAGCCCAATTGCAAGTAATGGTCGTGGATTTAACATTGGTCGTATGTACACAAAATCTGGAGAGCTTGTAGTGTCAGTGGCACAAGAAGGATTAATCCGAAGAAAGATACAGCGAAGAGCAAGACTATAATTAGATGGAGA

Fln Alignment:

biogeco2_mira_c13683___EHHVPMPSAPDPEMLVSRETLLESYLTDPRVPMSKRNSLAKRNIAPWPIEIRLCDTYDYEDSNIPATREPRQKYWLRARGKLSDDLALHRxxxxxxxxxxxLDTSLLPHRRKGEKISSLSLDHSMWFHQPFKADEWLLFAMESPIASNGRGFNIGRMYTKSGELVVSVAQEGLIRRKIQRRARL
A9NVP7__________________EHHEPMPSAPDPDMLVSREKLLESYLTDPRVPMSKRNSLAKRNIAPWPIEIRFCDTYD--DFNIVA-REPRQKYWLRARGKLSDDLALHWxxxxxxxxxxxLDTSVLPHHRKGEKISSLSLDHSMWFHKPFKADEWLLFVMESPIASNGRGFNIGRMYTRSGELVVSVAQEGLIRKKMQPRAKL

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
256	33	66			0.997452
262			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain