SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
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ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene16098

Length: 394 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene16098
GAGCGATGGGCGATGCGGACAATCGCAGGCGATCTTCTGTTAACAGCGCCAGCAGAGTTTGCTTCTCCTTCGCGGCATATGCCAAGAATGTAATCGATCACCTGCGCAGGTGCCAGGTTCCAATCGCACGGGGCCTCACGGATGAAGAATTCGGAAGGATCGAGGCCACTTTCGGCTTCGCATTCCCGCCGGATTTGAGATCGATTCTCCGGGAGGGGCTCCCGGTGGGAGTCGGGTTCCCAAACTGGAGATCGGGAGCCACGCAGCAGCTGAGAATGATGATGGATCTCCCCATGGCGGGGCTCTCCTACGAGGTCTCCAAGGGGAGATTCTGGTGGAAGGATTGGGGTTCGCAGCCTTACAGCAGCGACGAGGCTTTACGAGTGGCGAAGAC

Ace file of the UniGene biog2_v2.0_unigene16098 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11518	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	62%
Blast2go	protein	-	-	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	Transcription factor, MADS-box	IPR002100	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9SUD4

Fln msg: Distance to subject end: 215 aas, your sequence is shorter than subject: 130 - 372

Fln protein: AMGDADNRRRSSVNSASRVCFSFAAYAKNVIDHLRRCQVPIARGLTDEEFGRIEATFGFAFPPDLRSILREGLPVGVGFPNWRSGATQQLRMMMDLPMAGLSYEVSKGRFWWKDWGSQPYSSDEALRVAK

Protein Length: 131

Fln nts: GAGCGATGGGCGATGCGGACAATCGCAGGCGATCTTCTGTTAACAGCGCCAGCAGAGTTTGCTTCTCCTTCGCGGCATATGCCAAGAATGTAATCGATCACCTGCGCAGGTGCCAGGTTCCAATCGCACGGGGCCTCACGGATGAAGAATTCGGAAGGATCGAGGCCACTTTCGGCTTCGCATTCCCGCCGGATTTGAGATCGATTCTCCGGGAGGGGCTCCCGGTGGGAGTCGGGTTCCCAAACTGGAGATCGGGAGCCACGCAGCAGCTGAGAATGATGATGGATCTCCCCATGGCGGGGCTCTCCTACGAGGTCTCCAAGGGGAGATTCTGGTGGAAGGATTGGGGTTCGCAGCCTTACAGCAGCGACGAGGCTTTACGAGTGGCGAAGAC

Fln Alignment:

biogeco2_mira_c13642___FSFAAYAKNVIDHLRRCQVPIARGLTDEEFGRIEATFGFAFPPDLRSILREGLPVGVGFPNWRSGATQQLRMMMDLPMAGLSYEVSKGRFWWKDWGSQPYSSDEALRVAK
A9SUD4__________________FSFSAYARSVIDHLKKCEVPIAEGLSDEEFEKIEATYGFTFPPDLKGILQEGLPTGSGFPNWRTGNVQQLRMRINLPILRLLHEVAHSRFWWKPWGPRPLEIDHAVRIAR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain