SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene16077

Length: 334 nt

UniGene Fasta

>biog2_v2.0_unigene16077
ATGGGGCTGTTGTTATTGGTGCAGTTCCTGGTCGGGTAATTTTTCTTACTACCTTAGAGACGACAAAAATTGGAGCTCTAAGAGTCACAGAGAAACTAAAATCTTTCAGAGCCAACACAAGTAGCAATAGCAAATGGTGTTGCTGGAATGATGTCATCTCTTGCGGCACAGTCTGTCTTTGTTCCACTTGATGTGGTAAGTCAGAGGCTTATGGTGCAAGGCACTGCTTGTACTGCAAAATACAGTGGTGGTATTGATGCTGCTCGTAAGATTCTTATAGCTGATGGTATTCGTGGATTGTATAGAGGATTTGGTATGTCTGTCATGACATATT

Ace file of the UniGene biog2_v2.0_unigene16077

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11352	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Mitochondrial substrate carrier family protein n=3 Tax=Arabidopsis RepID=Q949U9_ARATH	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	mitochondrial carrier protein	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	79%
Blast2go	mitochondrial transport	GO:0006839	Biological Process	79%
Blast2go	binding	GO:0005488	Molecular Function	79%
Blast2go	mitochondrial inner membrane	GO:0005743	Cellular Component	79%
Blast2go	integral to membrane	GO:0016021	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3		IPR001993	-	-
Sma3	Mitochondrial carrier protein	IPR002067	-	-
Sma3	Adenine nucleotide translocator 1	IPR002113	-	-
Sma3	Hydroxymethylglutaryl-CoA reductase, class I/II	IPR002202	-	-
Sma3	Mitochondrial substrate/solute carrier	IPR018108	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ACT4

Fln msg: Separated hits, possible frame ERROR between 98 and 100, Distance to subject end: 127 aas, your sequence is shorter than subject: 111 - 318

Fln protein: GAVVIGAVPGRVIFLTTLETTKIGALRVTEKxxNLSEPTQVAIANGVAGMMSSLAAQSVFVPLDVVSQRLMVQGTACTAKYSGGIDAARKILIADGIRGLYRGFGMSVMTY

Protein Length: 112

Fln nts: ATGGGGCTGTTGTTATTGGTGCAGTTCCTGGTCGGGTAATTTTTCTTACTACCTTAGAGACGACAAAAATTGGAGCTCTAAGAGTCACAGAGAAACTxxxAAATCTTTCAGAGCCAACACAAGTAGCAATAGCAAATGGTGTTGCTGGAATGATGTCATCTCTTGCGGCACAGTCTGTCTTTGTTCCACTTGATGTGGTAAGTCAGAGGCTTATGGTGCAAGGCACTGCTTGTACTGCAAAATACAGTGGTGGTATTGATGCTGCTCGTAAGATTCTTATAGCTGATGGTATTCGTGGATTGTATAGAGGATTTGGTATGTCTGTCATGACATATT

Fln Alignment:

biogeco2_mira_c13617___GAVVIGAVPGRVIFLTTLETTKIGALRVTEKLxNLSEPTQVAIANGVAGMMSSLAAQSVFVPLDVVSQRLMVQGTACTAKYSGGIDAARKILIADGIRGLYRGFGMSVMTY
D5ACT4__________________GTVVIGAVPGRVIFLTTLETTKIGALRITEKLxNLSEPTQVAIANGVAGMMSSLAAQSVFVPLDVVSQRLMVQGTACTAKYSGGLDAARKILMTDGVRGLYRGFGMSVMTY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain