SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene16027

Length: 248 nt

UniGene Fasta

>biog2_v2.0_unigene16027
TTTGTGAAGTGGAAGGTTGGCCAGGAGCTCTCATGGGTGAACATTTTCCTTTCTTAGAGATCTTGCTGCCCGAAACTGCCTGGTAGGGGAGAACCACTTGGTGAAGGTAGCTGATTTTGGCCTGAGCAGGTTGATGACAGGGGACACCTACACAGCCCATGCTGGAGCCAAGTTCCCCATCAAATGGACTGCACCCGAGAGCCTGGCCTACAACAAGTTCTCCATCAAGTCCGACGTCACGCACTCGT

Ace file of the UniGene biog2_v2.0_unigene16027

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene56504	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: tyrosine-protein kinase ABL1 n=1 Tax=Monodelphis domestica RepID=UPI00020F590D	-	-	3.0e-28	100%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%
Blast2go	mutant bcr abl fusion protein	-	-	1.6344e-37	99%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-tyrosine kinases.	EC:2.7.10.-	-	1.6344e-37	99%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA damage induced protein phosphorylation	GO:0006975	Biological Process	1.6344e-37	99%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	1.6344e-37	99%
Blast2go	actin cytoskeleton organization	GO:0030036	Biological Process	1.6344e-37	99%
Blast2go	peptidyl-tyrosine phosphorylation	GO:0018108	Biological Process	1.6344e-37	99%
Blast2go	positive regulation of oxidoreductase activity	GO:0051353	Biological Process	1.6344e-37	99%
Blast2go	positive regulation of muscle cell differentiation	GO:0051149	Biological Process	1.6344e-37	99%
Blast2go	multicellular organismal process	GO:0032501	Biological Process	1.6344e-37	99%
Blast2go	manganese ion binding	GO:0030145	Molecular Function	1.6344e-37	99%
Blast2go	mitogen-activated protein kinase binding	GO:0051019	Molecular Function	1.6344e-37	99%
Blast2go	protein C-terminus binding	GO:0008022	Molecular Function	1.6344e-37	99%
Blast2go	protein tyrosine kinase activity	GO:0004713	Molecular Function	1.6344e-37	99%
Blast2go	proline-rich region binding	GO:0070064	Molecular Function	1.6344e-37	99%
Blast2go	magnesium ion binding	GO:0000287	Molecular Function	1.6344e-37	99%
Blast2go	SH3 domain binding	GO:0017124	Molecular Function	1.6344e-37	99%
Blast2go	ATP binding	GO:0005524	Molecular Function	1.6344e-37	99%
Blast2go	nucleolus	GO:0005730	Cellular Component	1.6344e-37	99%
Blast2go	cytosol	GO:0005829	Cellular Component	1.6344e-37	99%
Blast2go	perinuclear region of cytoplasm	GO:0048471	Cellular Component	1.6344e-37	99%
Blast2go	negative regulation of protein serine/threonine kinase activity	GO:0071901	Biological Process	1.6344e-37	99%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQ12

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 94 aas, your sequence is shorter than subject: 82 - 835

Fln protein: L*SGRLARSSHG*TFSFLRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVTHS

Protein Length: 83

Fln nts: TTTGTGAAGTGGAAGGTTGGCCAGGAGCTCTCATGGGTGAACATTTTCCTTTCTTAGAGATCTTGCTGCCCGAAACTGCCTGGTAGGGGAGAACCACTTGGTGAAGGTAGCTGATTTTGGCCTGAGCAGGTTGATGACAGGGGACACCTACACAGCCCATGCTGGAGCCAAGTTCCCCATCAAATGGACTGCACCCGAGAGCCTGGCCTACAACAAGTTCTCCATCAAGTCCGACGTCACGCACTCGT

Fln Alignment:

biogeco2_mira_c13557___RDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDV
C0PQ12__________________RDLKSSNLLVDKNWTVKVGDFGLSRLKNATFLTAKSGKGTP-QWMAPEVLRNEPSNEKSDV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain