SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene16014

Length: 220 nt

UniGene Fasta

>biog2_v2.0_unigene16014
ACTGTCAAGTACAAGGAAGTAATGAAAGAGTTTAGCCTCGGTCCCAACGGGGGGATTTTGACATCTTTGAACTTATTCGCTACCAAATTTGACGAGGTTATAGGATTGGTGGAGAAAAGGGCAGATGATCTTGACAACGTTCTTGTAGATACACCAGGGCAGATAGAAATATTTACTTGGTCTGCTTCAGGAGCCATAATTACAGAAGCTTTTGCTTCCA

Ace file of the UniGene biog2_v2.0_unigene16014

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17455	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	XPA-binding protein 1 [Arabidopsis thaliana] ref\|NP_974586.1\| XPA-binding protein 1 [Arabidopsis thaliana] gb\|AAL31895.1\|AF419563_1 AT4g21800/F17L22_260 [Arabidopsis thaliana] gb\|AAN28818.1\| At4g21800/F17L22_260 [Arabidopsis thaliana] gb\|AEE84504.1\| XPA-b	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	xpa-binding protein 1	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	embryo development	GO:0009790	Biological Process	89%
Blast2go	cell division	GO:0051301	Biological Process	89%
Blast2go	microtubule	GO:0005874	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Uncharacterised protein family, ATP binding	IPR004130	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AEC2

Fln msg: Distance to subject end: 199 aas, your sequence is shorter than subject: 73 - 373

Fln protein: TVKYKEVMKEFSLGPNGGILTSLNLFATKFDEVIGLVEKRADDLDNVLVDTPGQIEIFTWSASGAIITEAFAS

Protein Length: 74

Fln nts: ACTGTCAAGTACAAGGAAGTAATGAAAGAGTTTAGCCTCGGTCCCAACGGGGGGATTTTGACATCTTTGAACTTATTCGCTACCAAATTTGACGAGGTTATAGGATTGGTGGAGAAAAGGGCAGATGATCTTGACAACGTTCTTGTAGATACACCAGGGCAGATAGAAATATTTACTTGGTCTGCTTCAGGAGCCATAATTACAGAAGCTTTTGCTTCCA

Fln Alignment:

biogeco2_mira_c13541___TVKYKEVMKEFSLGPNGGILTSLNLFATKFDEVIGLVEKRADDLDNVLVDTPGQIEIFTWSASGAIITEAFAS
D5AEC2__________________TVKYKEVMKEFNLGPNGGILTSLNLFATKFDEVIGLVEKRADDIDYVLVDTPGQIEIFTWSASGAIITEAFAS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain