SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene16010

Length: 318 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene16010
TGATTCAAGAATAAGCATGCCATGCAGTCTCTGTCCACAGTGTACAATACAGTAGAGGCTGTGACAGCTCCATCTGTTATTGATTACCCAATGAAAGTTTTGAAGCCAATGCCTAGGGAGGAGTTTGCAGCTGTTTGTGTGGTTGAAATGTCTCCAGAAAATGAAAGTGAAAACTTTCTATGTATAAACAGTGACAGAAATTCATTCCTTCTTGTGAGAAGACCCAACAAGGGTTACTTGCAGGCCTTTGGGAGTTTCCCTCTGTCTTGCTTAGTGGATTGAATGTCAGCCTTGATGAACAAAAAGTGACCATGGATC

Ace file of the UniGene biog2_v2.0_unigene16010 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1245	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	A/G-specific adenine glycosylase [Arabidopsis thaliana] gb\|AEE83174.1\| A/G-specific adenine glycosylase [Arabidopsis thaliana]	-	-	42%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	45%
Blast2go	a g-specific adenine dna glycosylase	-	-	63%

Source	GOs	Term	Type	Identity
Blast2go	cellular process	GO:0009987	Biological Process	63%
Blast2go	metabolic process	GO:0008152	Biological Process	63%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	63%

Source	InterPros	Term	Type	Identity
Sma3	NUDIX hydrolase domain	IPR000086	-	-
Sma3	Helix-hairpin-helix motif	IPR000445	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3		IPR001993	-	-
Sma3	HhH-GPD domain	IPR003265	-	-
Sma3	Helix-hairpin-helix DNA-binding motif, class 1	IPR003583	-	-
Sma3	Endonuclease III-like, iron-sulphur cluster loop motif	IPR003651	-	-
Sma3	Endonuclease III, iron-sulphur binding site	IPR004035	-	-
Sma3	Mlo-related protein	IPR004326	-	-
Sma3	A/G-specific adenine glycosylase MutY, bacterial form	IPR005760	-	-
Sma3	Alpha/beta hydrolase fold-3	IPR013094	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: tr_plants

Fln subject: D7T2Q2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 75 aas, atg_distance in limit (1-15): atg_distance = 13, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 87 - 189

Fln protein: MQSLSTVYNTVEAVTAPSVIDYPMKVLKPMPREEFAAVCVVEMSPENESENFLCINSDRNSFLLVRRPNKGYLQAFGSFPLSCLVD*

Protein Length: 88

Fln nts: TGATTCAAGAATAAGCATGCC_-_ATGCAGTCTCTGTCCACAGTGTACAATACAGTAGAGGCTGTGACAGCTCCATCTGTTATTGATTACCCAATGAAAGTTTTGAAGCCAATGCCTAGGGAGGAGTTTGCAGCTGTTTGTGTGGTTGAAATGTCTCCAGAAAATGAAAGTGAAAACTTTCTATGTATAAACAGTGACAGAAATTCATTCCTTCTTGTGAGAAGACCCAACAAGGGTTACTTGCAGGCCTTTGGGAGTTTCCCTCTGTCTTGCTTAGTGGATTGAATGTCAGCCTTGATGAACAAAAAGTGACCATGGATC

Fln Alignment:

biogeco2_mira_c13535___VIDYPMKVLKPMPREEFAAVCVVEMSPENESENFLCINSDRNSFLLVRRPNKGYLQAFGSFPLSCLVD
D7T2Q2__________________VIDYPVKVIKAKKRHDFSVVSVVKILEEQDISKGSQYNS---RFLLVKRPNKGLLVDLWEFP-SVLLD

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain