SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene16008

Length: 294 nt

UniGene Fasta

>biog2_v2.0_unigene16008
GCCGGTCGTTGCCATCTGAAGATCCCGCACCGCTAGTTGAAGGAAATGCTTCACCAGAAGATCGTCAGTACTGGGGCTTTGGGCCAGAGGTGGAGCCATGGGCAAGCGAGCTAGTGTATTCAGTGGATTTATGGCGTGATCAGATTCAAAATTTTGTAGACCAGGTTATTGGTGAGCCAGTTTATGTTGTGGGTAACTCACTAGGAGGATTTGTGGGATTGTACTTTGCTTCATGCAACCCTCAACTAGTAAAGGGAATAACATTGCTAAATGCAACACCGTTTTGGGCATTTA

Ace file of the UniGene biog2_v2.0_unigene16008

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1880	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)	-	-	3.0e-32	29%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	36%
Blast2go	alpha beta hydrolase-fold family protein	-	-	0.0	76%

Source	GOs	Term	Type	Identity
Blast2go	chlorophyll catabolic process	GO:0015996	Biological Process	76%
Blast2go	pheophytinase activity	GO:0080124	Molecular Function	76%
Blast2go	plastid	GO:0009536	Cellular Component	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVX3

Fln msg: Distance to subject end: 171 aas, your sequence is shorter than subject: 97 - 394

Fln protein: RSLPSEDPAPLVEGNASPEDRQYWGFGPEVEPWASELVYSVDLWRDQIQNFVDQVIGEPVYVVGNSLGGFVGLYFASCNPQLVKGITLLNATPFWAF

Protein Length: 98

Fln nts: GCCGGTCGTTGCCATCTGAAGATCCCGCACCGCTAGTTGAAGGAAATGCTTCACCAGAAGATCGTCAGTACTGGGGCTTTGGGCCAGAGGTGGAGCCATGGGCAAGCGAGCTAGTGTATTCAGTGGATTTATGGCGTGATCAGATTCAAAATTTTGTAGACCAGGTTATTGGTGAGCCAGTTTATGTTGTGGGTAACTCACTAGGAGGATTTGTGGGATTGTACTTTGCTTCATGCAACCCTCAACTAGTAAAGGGAATAACATTGCTAAATGCAACACCGTTTTGGGCATTTA

Fln Alignment:

biogeco2_mira_c13532___GFGPEVEPWASELV--YSVDLWRDQIQNFVDQVIGEPVYVVGNSLGGFVGLYFASCNPQLVKGITLLNA
A9NVX3__________________GFG-----WSEKAIIDYNANVWRDQVADFLNEIVKDPAILVGNSLGGLTALITAADCPEFVSGVAILNS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain