SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene16006

Length: 295 nt

UniGene Fasta

>biog2_v2.0_unigene16006
GGAGGATATCAATTGTAAAATGTTCTTGAAAGGCTTCAACAAGCCTGGCTTTACCAGCTAACCCGGTTGAAGAATGAGTGTTTTAAGTACCTGTTTGATTTTGGAAAGATTCATGACGTGAGAGAAGATCTGAACATATTTTTACAGCATGCCGACAGGAAGTTGACCGTCGAGATGTTTCAAGAAGTTCTAAATGTTTGGAGGTTAATATAAACTGTCGACAAACCATCGTCTGTCTTTAAAACCCATAGTTACCAGAGTGTCCATGGATAAAATCACTTTATTTTCAATCTGT

Ace file of the UniGene biog2_v2.0_unigene16006

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1377	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	BTB/POZ domain-containing protein [Arabidopsis thaliana] ref\|NP_001077574.1\| BTB/POZ domain-containing protein [Arabidopsis thaliana] sp\|Q9XHZ8.1\|Y1178_ARATH RecName: Full=BTB/POZ domain-containing protein At1g21780 gb\|AAD41432.1\|AC007727_21 Contains simi	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	76%
Blast2go	btb poz domain-containing protein	-	-	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	78%
Blast2go	Cul3-RING ubiquitin ligase complex	GO:0031463	Cellular Component	0.0	78%

Source	InterPros	Term	Type	Identity
Sma3	BTB/POZ-like	IPR000210	-	-
Sma3	BSD	IPR005607	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	BTB/POZ	IPR013069	-	-
Sma3		IPR013089	-	-
Sma3	Claudin, conserved site	IPR017974	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P2K0

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 71 - 326

Fln protein: GGYQL*NVLERLQQAWLYQLTRLKNECFKYLFDFGKIHDVREDLNIFLQHADRKLTVEMFQEVLNVWRLI*

Protein Length: 72

Fln nts: GGAGGATATCAATTGTAAAATGTTCTTGAAAGGCTTCAACAAGCCTGGCTTTACCAGCTAACCCGGTTGAAGAATGAGTGTTTTAAGTACCTGTTTGATTTTGGAAAGATTCATGACGTGAGAGAAGATCTGAACATATTTTTACAGCATGCCGACAGGAAGTTGACCGTCGAGATGTTTCAAGAAGTTCTAAATGTTTGGAGGTTAATATAA___ACTGTCGACAAACCATCGTCTGTCTTTAAAACCCATAGTTACCAGAGTGTCCATGGATAAAATCACTTTATTTTCAATCTGT

Fln Alignment:

biogeco2_mira_c13530___NVLERLQQAWLYQLTRLKNECFKYLFDFGKIHDVREDLNIFLQHADRKLTVEMFQEVLNVWRL
A9P2K0__________________NVLERLQEAWLYQLSRLKKSCLMYLFDFGKIYDVRDDLNMFFQHADRELMIEMIQEVLNVWRV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain