SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene16001

Length: 270 nt

UniGene Fasta

>biog2_v2.0_unigene16001
CCAAATCAGCCTGCTTTACATAATATGGTGGCTGCTATCAATCCAGCTAACACTTTGCCTGGTGCTGCCCCCAATATTGTCACTGGTATGACACATGCTAACTTTGCTGCAATGCCATCAGCAGGATACATGAATTCAGGATACCCTACTATGTCTGGTGTTCAGTACCCTATGGGATATCAAGGGGCAGTGATGGGTCCTGCCACACTGCCTGTTGGACATGGTTCTGTTGGACCAGCGATGGTAAATGCAAACTCAACAGCTGGAAAT

Ace file of the UniGene biog2_v2.0_unigene16001

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6408	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9S3Y1_RICCO	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	rna binding	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	plant-type hypersensitive response	GO:0009626	Biological Process	76%
Blast2go	RNA binding	GO:0003723	Molecular Function	76%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	76%
Blast2go	cytoplasm	GO:0005737	Cellular Component	76%
Blast2go	positive regulation of salicylic acid mediated signaling pathway	GO:0080151	Biological Process	76%

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	Paraneoplastic encephalomyelitis antigen	IPR002343	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3		IPR015903	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AE17

Fln msg: Distance to subject end: 68 aas, your sequence is shorter than subject: 82 - 101

Fln protein: MVAAINPANTLPGAAPNIVTGMTHANFAAMPSAGYMNSGYPTMSGVQYPMGYQGAVMGPATLPVGHGSVGPAMVNANSTAGN

Protein Length: 83

Fln nts: CCAAATCAGCCTGCTTTACATAAT_-_ATGGTGGCTGCTATCAATCCAGCTAACACTTTGCCTGGTGCTGCCCCCAATATTGTCACTGGTATGACACATGCTAACTTTGCTGCAATGCCATCAGCAGGATACATGAATTCAGGATACCCTACTATGTCTGGTGTTCAGTACCCTATGGGATATCAAGGGGCAGTGATGGGTCCTGCCACACTGCCTGTTGGACATGGTTCTGTTGGACCAGCGATGGTAAATGCAAACTCAACAGCTGGAAAT

Fln Alignment:

biogeco2_mira_c13522___MGYQGAVMGPATLPVGHGSVGPAMVNANSTAGN
D5AE17__________________MGYQGAMMGPAALPVGHGSVGPAMVNANSAAGN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain