SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene15949

Length: 497 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene15949
CTATGTTTGACATGTATGATGTGTGTGCAGGATTCTGGGTTCCTGTTCGAGGTAACGGCTGGTCTGGTGAGATCACTGATATTCTTAAGGAACCTCGGCTTGCCAGGGGCAGAGAGGGCTGCTTGTTATTGGCAGCAGGTCTGAGATCATTGCCCTCGTTGGATTCGGCTTGTGAAACATTTGTGATTTTGGAGCTTCATCTCGATACTCTTGACTGGTACGAGGCTGCGAAGATGCCCATGGAGTTCTTCCAACACTTTGATGCCAGAGGTGACTTCAATATATTTGGTGGGATCGAAGGGGTTTATTTCTCGAGCAAAAGTCTGGGCCCGGAGAGATTGGTGTTTTGGGATTTTTCAGGCGGTGAAACCGAGTGTTGGAGTTGGCTCAATATTCCTTTTGAGGGGAGGAATGTAATTTCAAGAGCAATTCCATTTGAATTCTTTCTGAATGCTGTGCCCTGAATAAACGTATGCAGGATGATTGGCTGCTGTGGC

Ace file of the UniGene biog2_v2.0_unigene15949 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5957	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SKP1-interacting partner 15 n=2 Tax=Arabidopsis RepID=SKI15_ARATH	-	-	3.0e-18	42%
FL-Next	sp=SKP1-interacting partner 15; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	42%
Blast2go	f-box family protein	-	-	1.07107e-21	52%

Source	GOs	Term	Type	e value	Identity
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	1.07107e-21	52%
Blast2go	protein binding	GO:0005515	Molecular Function	1.07107e-21	52%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: O49279

Fln msg: your sequence is shorter than subject: 154 - 374

Fln protein: MFDMYDVCAGFWVPVRGNGWSGEITDILKEPRLARGREGCLLLAAGLRSLPSLDSACETFVILELHLDTLDWYEAAKMPMEFFQHFDARGDFNIFGGIEGVYFSSKSLGPERLVFWDFSGGETECWSWLNIPFEGRNVISRAIPFEFFLNAVP*

Protein Length: 155

Fln nts: CTATGTTTGACATGTATGATGTGTGTGCAGGATTCTGGGTTCCTGTTCGAGGTAACGGCTGGTCTGGTGAGATCACTGATATTCTTAAGGAACCTCGGCTTGCCAGGGGCAGAGAGGGCTGCTTGTTATTGGCAGCAGGTCTGAGATCATTGCCCTCGTTGGATTCGGCTTGTGAAACATTTGTGATTTTGGAGCTTCATCTCGATACTCTTGACTGGTACGAGGCTGCGAAGATGCCCATGGAGTTCTTCCAACACTTTGATGCCAGAGGTGACTTCAATATATTTGGTGGGATCGAAGGGGTTTATTTCTCGAGCAAAAGTCTGGGCCCGGAGAGATTGGTGTTTTGGGATTTTTCAGGCGGTGAAACCGAGTGTTGGAGTTGGCTCAATATTCCTTTTGAGGGGAGGAATGTAATTTCAAGAGCAATTCCATTTGAATTCTTTCTGAATGCTGTGCCCTGA___ATAAACGTATGCAGGATGATTGGCTGCTGTGGC

Fln Alignment:

biogeco2_mira_c13460___WVPVRGNGWSGEITDILKEPRLARGR-EGCLLLAAGLRSLPSLDSACETFVILELHLDTLDWYEAAKMPMEFFQHFDARGDFNIFGGIEGVYFSSKSLGPERLVFWDFSGGETECWSWL
O49279__________________WVCLEKHEW-GDIFDIIKRPRLLRGNGDSKLLMIGGLKSTFSLNPACSTILILRLDLESLEWEEAGRMPLEMYRGFQESSKFKVFGGGDRVYFSAKRMG--KLAMWDCWQG----WRWI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain