SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene15948

Length: 275 nt

UniGene Fasta

>biog2_v2.0_unigene15948
GCCGTCAAAGATCTTCTAATGCAGGGAGTAGATGCCAACTATTGTGACAAACAAGGAATGTCTTTATTGCATTTGGCTACAGTTTTTAATCACACAGAAATTGCATTTATTCTGATGGATGCTGGAGCTAGTGTGGATGCAAAAAATGCACAAGGGGAAACGCCACTGGATTGCGCACCAACTATGTTACAGTACAAAATGCATCAGAAGATACAGGCTTCTAGCATGTAGCAGTTAATTGACGGTTTTATTACTTAGCAATTTTACAGTTTTCA

Ace file of the UniGene biog2_v2.0_unigene15948

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2816	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ankyrin repeat family protein [Arabidopsis thaliana] gb\|AAL38772.1\| unknown protein [Arabidopsis thaliana] gb\|AAM20189.1\| unknown protein [Arabidopsis thaliana] gb\|AEC07808.1\| Ankyrin repeat family protein [Arabidopsis thaliana]	-	-	1.0e-33	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Blast2go	protein	-	-	0.0	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	0.0	63%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, FYVE-type	IPR000306	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Zinc finger, FYVE-related	IPR017455	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ACK5

Fln msg: your sequence is shorter than subject: 77 - 302

Fln protein: AVKDLLMQGVDANYCDKQGMSLLHLATVFNHTEIAFILMDAGASVDAKNAQGETPLDCAPTMLQYKMHQKIQASSM*

Protein Length: 78

Fln nts: GCCGTCAAAGATCTTCTAATGCAGGGAGTAGATGCCAACTATTGTGACAAACAAGGAATGTCTTTATTGCATTTGGCTACAGTTTTTAATCACACAGAAATTGCATTTATTCTGATGGATGCTGGAGCTAGTGTGGATGCAAAAAATGCACAAGGGGAAACGCCACTGGATTGCGCACCAACTATGTTACAGTACAAAATGCATCAGAAGATACAGGCTTCTAGCATGTAG___CAGTTAATTGACGGTTTTATTACTTAGCAATTTTACAGTTTTCA

Fln Alignment:

biogeco2_mira_c13459___AVKDLLMQGVDANYCDKQGMSLLHLATVFNHTEIAFILMDAGASVDAKNAQGETPLDCAPTMLQYKMHQKIQASS
D5ACK5__________________AVKDLLMQGVDANYCDKQGMSLLHLATVFNHTEIAFILMDAGASVDAKNAQGETPLDCAPTMLQYKMHQKIQEAS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain