SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene15825

Length: 518 nt

UniGene Fasta

>biog2_v2.0_unigene15825
GAAATTGTCTTTTCTCCTTAATTCCGATTTTGTCGATTAACTAGAATTTTTTGCGCAAGTACAGATGAGCTCAGCAATCTCTTACTTCATAGCTTTTCCTGTTTTCAGTCTATGCGAGCTTTGGGGATTGAAATTCTGGTATGTAGCAGGAGGAGTTAGTTTTTGTTGAGCAATGAGTGATATTGAGTGTTAAATCTTTGTGGGTAGGACCAGGGAGGGATCATCTATCTGTTGGATTGTTCGAGTTCATTCATTTATTCATTCATGCATCTTTCAATATGGAAGCCCATATCACTGTGTGCAGCCCTAATCATGGATAAGAAGAACAAAAAGAAGGGTGTGATTGAGCCAGCAGGATGTCTTCTCTACTCAGACAGCAGCAGGAGAAGAACTTGAGGGAAGCCCTTGAAGAGGCATCTGAAGATGGTTCTCTGGTCAAATCTCAGCAAGTTGATGAGCAAGACCTTTCTTCACAGCTTGTTCAACGATCCAGATCTTTGGCTCGTCTCAATGCCCAG

Ace file of the UniGene biog2_v2.0_unigene15825

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene59953	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	catalytic/ pyridoxal phosphate binding protein [Arabidopsis thaliana] emb\|CAB16785.1\| putative protein [Arabidopsis thaliana] emb\|CAB80376.1\| putative protein [Arabidopsis thaliana] gb\|AEE86754.1\| catalytic/ pyridoxal phosphate binding protein [Arabidopsi	-	-	5.0e-30	47%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	54%
Blast2go	catalytic pyridoxal phosphate binding protein	-	-	1.96108e-39	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	1.96108e-39	70%

Source	InterPros	Term	Type	e value	Identity
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: tr_plants

Fln subject: A5BXA6

Fln msg: Separated hits, possible frame ERROR between 336 and 354, Distance to subject end: 804 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 85 - 942

Fln protein: MHLSIWKPISLCAALIMDKKNKKxxxxxxxRMSSLLRQQQEKNLREALEEASEDGSLVKSQQVDEQDLSSQLVQRSRSLARLNAQ

Protein Length: 86

Fln nts: GAAATTGTCTTTTCTCCTTAATTCCGATTTTGTCGATTAACTAGAATTTTTTGCGCAAGTACAGATGAGCTCAGCAATCTCTTACTTCATAGCTTTTCCTGTTTTCAGTCTATGCGAGCTTTGGGGATTGAAATTCTGGTATGTAGCAGGAGGAGTTAGTTTTTGTTGAGCAATGAGTGATATTGAGTGTTAAATCTTTGTGGGTAGGACCAGGGAGGGATCATCTATCTGTTGGATTGTTCGAGTTCATTCATTTATTCATTC_-_ATGCATCTTTCAATATGGAAGCCCATATCACTGTGTGCAGCCCTAATCATGGATAAGAAGAACAAAAAGAAxxxxxxxxxxxxxxxxxxCAGGATGTCTTCTCTACTCAGACAGCAGCAGGAGAAGAACTTGAGGGAAGCCCTTGAAGAGGCATCTGAAGATGGTTCTCTGGTCAAATCTCAGCAAGTTGATGAGCAAGACCTTTCTTCACAGCTTGTTCAACGATCCAGATCTTTGGCTCGTCTCAATGCCCAG

Fln Alignment:

biogeco2_mira_c13306___SSFIYSFMHLSIWKPISLCAALIMDKKNKKKxxxxxxRMSSLLRQQQEKNLREALEEASEDGSLVKSQQVD
A5BXA6__________________TNFLSAFMHISLWKPISHCAALILVKKGRRRxxxxxxRKPSILRQLQENKLREALEEASEDGSLVKSQDID

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain