SustainPineDB

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Assembly info
Unigenes
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SSRs
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GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene15792

Length: 300 nt

UniGene Fasta

>biog2_v2.0_unigene15792
CTGTGATGCAAACGGCGGCAGTTATCATGGATGATGGTTTAAATTCACTGTAGGACCGACCAATGGTCACAAATTATTACTGTTGTTATATTTTGCAGAGATCGAGAAGCTAAATATGTCTGAACACAGATCCTTTTCCGTGAGAATAAATGGTGGAAATCGGTCTGAAGCCATTACTGCTCTGAGCAATTATTCTACCCTGGAGCGAACATTCATATCCAACCAAGCAGAGGACTTCAACTTTGCCTTGGTGAGCACTAGTGACGCTACCAGTGGTCCTATCATCAACGCTTTTGAGAC

Ace file of the UniGene biog2_v2.0_unigene15792

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28726	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative LRR receptor-like serine/threonine-protein kinase [Arabidopsis thaliana] sp\|C0LGI2.1\|Y1677_ARATH RecName: Full=Probable LRR receptor-like serine/threonine-protein kinase At1g67720; Flags: Precursor gb\|ACN59267.1\| leucine-rich repeat receptor-like	-	-	8.0e-37	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%
Blast2go	probable lrr receptor-like serine threonine-protein kinase at1g67720-like	-	-	0.0	51%

Source	InterPros	Term	Type	e value	Identity
Sma3	Leucine-rich repeat	IPR001611	-	0.0	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLS6

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 201 aas, your sequence is shorter than subject: 99 - 552

Fln protein: CDANGGSYHG*WFKFTVGPTNGHKLLLLLYFAEIEKLNMSEHRSFSVRINGGNRSEAITALSNYSTLERTFISNQAEDFNFALVSTSDATSGPIINAFE

Protein Length: 100

Fln nts: CTGTGATGCAAACGGCGGCAGTTATCATGGATGATGGTTTAAATTCACTGTAGGACCGACCAATGGTCACAAATTATTACTGTTGTTATATTTTGCAGAGATCGAGAAGCTAAATATGTCTGAACACAGATCCTTTTCCGTGAGAATAAATGGTGGAAATCGGTCTGAAGCCATTACTGCTCTGAGCAATTATTCTACCCTGGAGCGAACATTCATATCCAACCAAGCAGAGGACTTCAACTTTGCCTTGGTGAGCACTAGTGACGCTACCAGTGGTCCTATCATCAACGCTTTTGAGAC

Fln Alignment:

biogeco2_mira_c13272___FTVGPTNGHKLLLLLYFAEIEKLNMSEHRSFSVRINGGNRSEAITALSNYSTLERTFISNQAEDFNFALVSTSDATSGPIINAFE
B8LLS6__________________FLLDSTFDSAILLVLYFAEIETLNMSESRSFHVQLDGVQHS-TITLMRNYSALEVT-ISPDTEIGRVELVESTNSTLPPIINAYE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain