SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene15791

Length: 405 nt

UniGene Fasta

>biog2_v2.0_unigene15791
GAGGAAAGCATCATCTGTGATGCTCTGTAATTCCGAAGACCTTAAGAGACACAGGAATTGTGAAGGAATTCTCATGTCTGGAACGCTGCATGAACAGATTGCTGACGTATGGAATCAACTAAAGAGATCTAGGTGTACAGGGAATAAATATTCGCAAGCAACGGTTTTTCNGCCTGGCAAATTTGTTGAGAAGGTTACTGATCATAATATACAATTATTCATGAGATGTGAACAACACAGACATAACGAAACTCAGTTACACCAAGTGATAGCAAGGCTAGAGAATGAGTTGATGATGGCAAGAAGGAAGTTTGCACAACTGAGATCTTCTGTGGAACTCCAGAATAAAAAACAAGCAAAAAGTTTGGGATGGATTGAATCCCTGGTTACCAGCTATGCAAGATT

Ace file of the UniGene biog2_v2.0_unigene15791

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8431	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	zinc finger	-	-	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	ATP binding	GO:0005524	Molecular Function	0.0	71%

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	4Fe-4S ferredoxin-type, iron-sulpur binding domain	IPR017896	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A973

Fln msg: STOP codon was not found. Distance to subject end: 10 aas, your sequence is shorter than subject: 134 - 290

Fln protein: RKASSVMLCNSEDLKRHRNCEGILMSGTLHEQIADVWNQLKRSRCTGNKYSQATVFQPGKFVEKVTDHNIQLFMRCEQHRHNETQLHQVIARLENELMMARRKFAQLRSSVELQNKKQAKSLGWIESLVTSYAR

Protein Length: 135

Fln nts: GAGGAAAGCATCATCTGTGATGCTCTGTAATTCCGAAGACCTTAAGAGACACAGGAATTGTGAAGGAATTCTCATGTCTGGAACGCTGCATGAACAGATTGCTGACGTATGGAATCAACTAAAGAGATCTAGGTGTACAGGGAATAAATATTCGCAAGCAACGGTTTTTCaGCCTGGCAAATTTGTTGAGAAGGTTACTGATCATAATATACAATTATTCATGAGATGTGAACAACACAGACATAACGAAACTCAGTTACACCAAGTGATAGCAAGGCTAGAGAATGAGTTGATGATGGCAAGAAGGAAGTTTGCACAACTGAGATCTTCTGTGGAACTCCAGAATAAAAAACAAGCAAAAAGTTTGGGATGGATTGAATCCCTGGTTACCAGCTATGCAAGATT

Fln Alignment:

biogeco2_mira_c13271___RKASSVMLCNSEDLKRHRNCEGILMSGTLHEQIADVWNQLKRSRCTGNKYSQATVFQPGKFVEKVTDHNIQLFMRCEQHRHNETQLHQVIARLENELMMARRKFAQLRSSVELQNKKQAKSL
D5A973__________________RKAPPVMLCNADDLKRHRNCEGVLMSGTLHEQIDAVWNQLKASKCTGNKYSQATVFLPGKFVEKVTDYNIQLFMRCEQYRHSKTQLHQVITRLENELTMARKKFAQLRSSVELQNKKQAESL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain