SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene15772

Length: 361 nt

UniGene Fasta

>biog2_v2.0_unigene15772
ATGGGGCTTGTGACAGGCTAATCTATTGAAAGCCTGAGGTGGACCGTCTACCCTCTCTGGTTCTGGCAATAGCTGTAGCTTGCTATCGTTACTTCTGCTAATGGCGAGTGAAGGATTCGAACCCTCGCCTTTCACTCGCATCCGCAAGGTAACTTTGAATTTCAGGCTTCCATACTTCACACAATGGGGCCAGAATTTGATGATCTGCGGGTCAGATCCCGCGCTTGGAGCGTGGAAAACGACGCAGGGACTGCGAATGACGCCTCGTCTTCAGGCCGCGGATGTTCTTGTTTGGCATGCAACCCTCACCGTCCCTCACGATTTCTCTTGCAATTACAGTTATTATGTCATCGACGACCAG

Ace file of the UniGene biog2_v2.0_unigene15772

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8724	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	4-alpha-glucanotransferase, putative n=1 Tax=Ricinus communis RepID=B9SCF0_RICCO	-	-	1.0e-21	50%
FL-Next	sp=4-alpha-glucanotransferase DPE2; Oryza sativa subsp. japonica (Rice).	-	-	0.0	49%
Blast2go	4-alpha-glucanotransferase dpe2-like	-	-	4.12254e-24	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity, transferring glycosyl groups	GO:0016757	Molecular Function	4.12254e-24	71%
Blast2go	binding	GO:0005488	Molecular Function	4.12254e-24	71%

Source	InterPros	Term	Type	Identity
Sma3	Carbohydrate binding module family 20	IPR002044	-	-
Sma3	Glycoside hydrolase, family 77	IPR003385	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Immunoglobulin-like fold	IPR013783	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q69Q02

Fln msg: Distance to subject end: 864 aas, your sequence is shorter than subject: 87 - 946

Fln protein: MASEGFEPSPFTRIRKVTLNFRLPYFTQWGQNLMICGSDPALGAWKTTQGLRMTPRLQAADVLVWHATLTVPHDFSCNYSYYVIDDQ

Protein Length: 88

Fln nts: ATGGGGCTTGTGACAGGCTAATCTATTGAAAGCCTGAGGTGGACCGTCTACCCTCTCTGGTTCTGGCAATAGCTGTAGCTTGCTATCGTTACTTCTGCTA_-_ATGGCGAGTGAAGGATTCGAACCCTCGCCTTTCACTCGCATCCGCAAGGTAACTTTGAATTTCAGGCTTCCATACTTCACACAATGGGGCCAGAATTTGATGATCTGCGGGTCAGATCCCGCGCTTGGAGCGTGGAAAACGACGCAGGGACTGCGAATGACGCCTCGTCTTCAGGCCGCGGATGTTCTTGTTTGGCATGCAACCCTCACCGTCCCTCACGATTTCTCTTGCAATTACAGTTATTATGTCATCGACGACCAG

Fln Alignment:

biogeco2_mira_c13244___IRKVTLNFRLPYFTQWGQNLMICGSDPALGAWKTTQGLRMTPRLQAADVLVWHATLTVPHDFSCNYSYYVIDD
Q69Q02__________________LNTVTLVFKLPYYTQWGQSLLIAGSEPALGSWNVKQGLSLSP-VHQGNELIWSGRVSVATGFTCQYNYYVVDD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain