SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene15716

Length: 420 nt

UniGene Fasta

>biog2_v2.0_unigene15716
TGAGCCAACTGTATGCTTGAGTGATGATATGGAAACAAATGAATGTTTGAAAAATAATGGTGGTTGCTGGCAAGACAAGAAGTCAAATATAACTGCCTGCAAGGATACTTTTCGGGGAAGGGTTTGTGAGTGTCCCTTGGTAGACGGTGTTCAATTTAAGGGAGATGGTTATTCTAACTGTGAAGCTGCCGGGCCAGGACGGTGCAAAATCAATAATGGGGGTTGCTGGCATAGTACCCAGGATGGACAGATGTTCTCTGCTTGTCTGGACACACAGACAAGTGGATGCAAGTGTCCTCCTGGATTTAGGGGAGATGGTGTTGATAAGTGTGAAGATATAAATGAATGCAAAGAAAAGGTAGCTTGCCAGTGCTCAGAGTGCAGTTGCAAAAATACATGGGCAGCTATGATTGTAGCTGC

Ace file of the UniGene biog2_v2.0_unigene15716

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15314	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PA multi-domain protein	-	-	6.0e-12	30%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Blast2go	vacuolar sorting receptor	-	-	0.0	87%

Source	GOs	Term	Type	Identity
Blast2go	protein targeting to vacuole	GO:0006623	Biological Process	87%
Blast2go	Golgi transport complex	GO:0017119	Cellular Component	87%
Blast2go	vacuole	GO:0005773	Cellular Component	87%
Blast2go	membrane	GO:0016020	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	EGF-type aspartate/asparagine hydroxylation site	IPR000152	-	-
Sma3	EGF-like calcium-binding, conserved site	IPR018097	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Protease-associated domain, PA	IPR003137	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPV3

Fln msg: Distance to subject end: 83 aas, your sequence is shorter than subject: 139 - 635

Fln protein: EPTVCLSDDMETNECLKNNGGCWQDKKSNITACKDTFRGRVCECPLVDGVQFKGDGYSNCEAAGPGRCKINNGGCWHSTQDGQMFSACLDTQTSGCKCPPGFRGDGVDKCEDINECKEKVACQCSECSCKNTWAAMIVA

Protein Length: 140

Fln nts: TGAGCCAACTGTATGCTTGAGTGATGATATGGAAACAAATGAATGTTTGAAAAATAATGGTGGTTGCTGGCAAGACAAGAAGTCAAATATAACTGCCTGCAAGGATACTTTTCGGGGAAGGGTTTGTGAGTGTCCCTTGGTAGACGGTGTTCAATTTAAGGGAGATGGTTATTCTAACTGTGAAGCTGCCGGGCCAGGACGGTGCAAAATCAATAATGGGGGTTGCTGGCATAGTACCCAGGATGGACAGATGTTCTCTGCTTGTCTGGACACACAGACAAGTGGATGCAAGTGTCCTCCTGGATTTAGGGGAGATGGTGTTGATAAGTGTGAAGATATAAATGAATGCAAAGAAAAGGTAGCTTGCCAGTGCTCAGAGTGCAGTTGCAAAAATACATGGGCAGCTATGATTGTAGCTGC

Fln Alignment:

biogeco2_mira_c13179___EPTVCLSDDMETNECLKNNGGCWQDKKSNITACKDTFRGRVCECPLVDGVQFKGDGYSNCEAAGPGRCKINNGGCWHSTQDGQMFSACLDTQTSGCKCPPGFRGDGVDKCEDINECKEKVACQCSECSCKNTWAA
B8LPV3__________________EPTVCLSEDMETNECLKNNGGCWQDKKANITACKDTFRGRVCECPLVEGVQFKGDGYSNCEAAGPGRCKINNGGCWHSTQDGQMFSACLDTQTTGCKCPPGFRGDGVDKCEDINECKEKVACQCSECSCKNTWGS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain