SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene15706

Length: 272 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene15706
GCCTTGCTCGATGCAATTTTGAGTCACGTGCCTCCACCAAAAGCAAATCTAGAAGAACCATTTAAGATGATGGTATCAATGATGGAGCGTGACTTTACTTGGGTCGAATCTTAACTGGCCGTATCACTTCAGGCATTGTTCGTATAGGAGATAAAGTGCACGGTCTACGTAAGACTGCTTCTGGATCTGAGAAAACTGAAGAAGGGAGGGTCGTGAAGCTTATGAAAAAGAAGGGAATGTCTACAGCTTTGATTGACTGTGCTGGTGCTGGT

Ace file of the UniGene biog2_v2.0_unigene15706 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2327	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Elongation factor-like protein n=7 Tax=Arabidopsis RepID=F4IPW5_ARATH	-	-	75%
FL-Next	tr=Elongation factor-like protein; Arabidopsis thaliana (Mouse-ear cress).	-	-	74%
Blast2go	elongation factor-like protein	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	GTP catabolic process	GO:0006184	Biological Process	89%
Blast2go	translation elongation factor activity	GO:0003746	Molecular Function	89%
Blast2go	GTPase activity	GO:0003924	Molecular Function	89%
Blast2go	GTP binding	GO:0005525	Molecular Function	89%
Blast2go	mitochondrion	GO:0005739	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	Translation elongation factor EFG/EF2, C-terminal	IPR000640	-	-
Sma3	Translation elongation factor EFTu/EF1A, domain 2	IPR004161	-	-
Sma3	GTP-binding protein TypA	IPR006298	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F4IPW5

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 96 and 96, Distance to subject end: 335 aas, your sequence is shorter than subject: 91 - 671

Fln protein: ALLDAILSHVPPPKANLEEPFKMMVSMMERDxxLGRILTGRITSGIVRIGDKVHGLRKTASGSEKTEEGRVVKLMKKKGMSTALIDCAGAG

Protein Length: 92

Fln nts: GCCTTGCTCGATGCAATTTTGAGTCACGTGCCTCCACCAAAAGCAAATCTAGAAGAACCATTTAAGATGATGGTATCAATGATGGAGCGTGACxxxxxxTTGGGTCGAATCTTAACTGGCCGTATCACTTCAGGCATTGTTCGTATAGGAGATAAAGTGCACGGTCTACGTAAGACTGCTTCTGGATCTGAGAAAACTGAAGAAGGGAGGGTCGTGAAGCTTATGAAAAAGAAGGGAATGTCTACAGCTTTGATTGACTGTGCTGGTGCTGGT

Fln Alignment:

biogeco2_mira_c13165___LLDAILSHVPPPKANLEEPFKMMVSMMERDFYLGRILTGRITSGIVRIGDKVHGLRKTASGSEKTEEGRVVKLMKKKGMSTALIDCAGAG
F4IPW5__________________LLDAVVRHVQPPKANLDEPFLMLVSMMEKDFYLGRILTGRVTSGVVRVGDRVNGLRKTDSGSEKIEEAKVVKLMKKKGTTIVSIDAAGAG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain