SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene15627

Length: 468 nt

UniGene Fasta

>biog2_v2.0_unigene15627
TGTGCTCCTGACTTTCAGTTTGGAATGTGGAATCAAGCCTCGTTACAGGGTGTTGAAATCTATAAGCGCAATGCAACCTTTAAACCATTTTCCTAGTCTTAGTGCTGTGCTTTGTTTAAGTGAGCGAAATTTCTCGAAAAGTATGTGAAATCCAGTTCCGATGCCACAAAATTGCTTGAATTTATAGTGGCAAGTCTGTTGATCTTGACAATGATCTGTTTGAAAGACTACAAATTCAAGGATTCTGATTCGGTGATTGCATTCCCTTGCTCCTGTATATTGAAAGAGAAGGGATCCTGAGTCCGTTATGACCCTGTGTGATCCCTTTAGCCCACATGTGCATTTAGTAGATATAGAAGATAATGACGTTGAGCAGGGTCTTGCTTTGGCTAGTTTACTTTCACATCACAATCATCAAGCATTATTGAAGGATGTTCAGTTGGAACAAAATCTTCAAGAAATGATCTC

Ace file of the UniGene biog2_v2.0_unigene15627

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4425	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Mitochondrial transcription termination factor family protein n=2 Tax=Arabidopsis RepID=O64531_ARATH	-	-	1.0e-15	28%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%
Blast2go	mitochondrial transcription termination factor family protein	-	-	0.0	54%

Source	InterPros	Term	Type	e value	Identity
Sma3	Mitochodrial transcription termination factor-related	IPR003690	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAV5

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 25 aas, your sequence is shorter than subject: 49 - 335

Fln protein: VLLTFSLECGIKPRYRVLKSISAMQPLNHFPSLSAVLCLSERNFSKSM*

Protein Length: 50

Fln nts: TGTGCTCCTGACTTTCAGTTTGGAATGTGGAATCAAGCCTCGTTACAGGGTGTTGAAATCTATAAGCGCAATGCAACCTTTAAACCATTTTCCTAGTCTTAGTGCTGTGCTTTGTTTAAGTGAGCGAAATTTCTCGAAAAGTATGTGA___AATCCAGTTCCGATGCCACAAAATTGCTTGAATTTATAGTGGCAAGTCTGTTGATCTTGACAATGATCTGTTTGAAAGACTACAAATTCAAGGATTCTGATTCGGTGATTGCATTCCCTTGCTCCTGTATATTGAAAGAGAAGGGATCCTGAGTCCGTTATGACCCTGTGTGATCCCTTTAGCCCACATGTGCATTTAGTAGATATAGAAGATAATGACGTTGAGCAGGGTCTTGCTTTGGCTAGTTTACTTTCACATCACAATCATCAAGCATTATTGAAGGATGTTCAGTTGGAACAAAATCTTCAAGAAATGATCTC

Fln Alignment:

biogeco2_mira_c13071___VLLTFSLECGIKPRYRVLKSISAMQPLNHFPSLSAVLCLSERNFSKSM*NPVPMPQNCLNL
D5AAV5__________________LLPAFSLESRIKPRHKVLMSISALQPSERLPSLTYVLSLSERKFLEKYVNCSPYATKLLEI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain