SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene15585

Length: 238 nt

UniGene Fasta

>biog2_v2.0_unigene15585
GCTTGAGATGGTAGAGACCTTGAAACATGAAAAGCTACGCTTGCATTTTGAAGCAGAAATCCGTCAAGCTCCTCCCCTTCCGATGAGGAGGTTTGGGAACATATGAGGCATAAAGTGAGAGAACTGCGGGAGGAATTGCGATTGGAAAATAGGAAAGCATTTGGAAATATTTGGTCAGACACGGTTGCTGGGATCACTGCATTCCTCATCTTAGTTTCAATCGAAGTAAAGTGGAAAT

Ace file of the UniGene biog2_v2.0_unigene15585

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4663	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	CemA-like proton extrusion protein-like protein [Arabidopsis thaliana] gb\|AAL85996.1\| unknown protein [Arabidopsis thaliana] gb\|AAP04130.1\| unknown protein [Arabidopsis thaliana] dbj\|BAD43184.1\| unknown protein [Arabidopsis thaliana] dbj\|BAD43308.1\| unkno	-	-	60%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	53%
Blast2go	protein	-	-	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	integral to membrane	GO:0016021	Cellular Component	0.0	79%
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	79%

Source	InterPros	Term	Type	Identity
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	Chloroplast envelope membrane protein, CemA	IPR004282	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9N815

Fln msg: Separated hits, possible frame ERROR between 79 and 82, Distance to subject end: 98 aas, your sequence is shorter than subject: 79 - 440

Fln protein: LEMVETLKHEKLRLHFEAEIRQAPPxxDEEVWEHMRHKVRELREELRLENRKAFGNIWSDTVAGITAFLILVSIEVKWK

Protein Length: 80

Fln nts: GCTTGAGATGGTAGAGACCTTGAAACATGAAAAGCTACGCTTGCATTTTGAAGCAGAAATCCGTCAAGCTCCTCCCCTxxxCGATGAGGAGGTTTGGGAACATATGAGGCATAAAGTGAGAGAACTGCGGGAGGAATTGCGATTGGAAAATAGGAAAGCATTTGGAAATATTTGGTCAGACACGGTTGCTGGGATCACTGCATTCCTCATCTTAGTTTCAATCGAAGTAAAGTGGAAAT

Fln Alignment:

biogeco2_mira_c13023___LEMVETLKHEKLRLHFEAEIRQAPPLxDEEVWEHMRHKVXXXXXXXXXXNRKAFGNIWSDTVAGITAFLIL
B9N815__________________LEMIKEIKLEKARLKLEVEIGKSPPLxDEEEWRELRHKALELRDEWRLENRRSFANIWSDMVFGVSIFVLL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain