SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene15571

Length: 248 nt

UniGene Fasta

>biog2_v2.0_unigene15571
GCTTCCTTTTCTGGTAAGCATTGATCTCTCCCAGAACAAGTTTACGGGACCTATTCCTGCTGAGCTTTATAATTGCACATACCTCAATATCCTCCGCCTGAATGGAAATCAACTTACAGGGGCAATTCCCTGGGAATTGACACGGCTCGATCGTCTCAAGGACTTCAATGTAGCAAACAACAAGCTAACTGGAAATATACCTTCATTCCCTCACAACATTTCTGCCTCTAGTTTTCAGGGTAACCCTG

Ace file of the UniGene biog2_v2.0_unigene15571

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1514	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Os05g0414700 protein (Fragment) n=3 Tax=Oryza sativa RepID=Q0DI56_ORYSJ	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	79%
Blast2go	probably inactive leucine-rich repeat receptor-like protein kinase at5g48380-like	-	-	74%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	74%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	74%
Blast2go	ATP binding	GO:0005524	Molecular Function	74%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	74%
Blast2go	membrane	GO:0016020	Cellular Component	74%

Source	InterPros	Term	Type	Identity
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LM41

Fln msg: Distance to subject end: 406 aas, your sequence is shorter than subject: 82 - 613

Fln protein: LPFLVSIDLSQNKFTGPIPAELYNCTYLNILRLNGNQLTGAIPWELTRLDRLKDFNVANNKLTGNIPSFPHNISASSFQGNP

Protein Length: 83

Fln nts: GCTTCCTTTTCTGGTAAGCATTGATCTCTCCCAGAACAAGTTTACGGGACCTATTCCTGCTGAGCTTTATAATTGCACATACCTCAATATCCTCCGCCTGAATGGAAATCAACTTACAGGGGCAATTCCCTGGGAATTGACACGGCTCGATCGTCTCAAGGACTTCAATGTAGCAAACAACAAGCTAACTGGAAATATACCTTCATTCCCTCACAACATTTCTGCCTCTAGTTTTCAGGGTAACCCTG

Fln Alignment:

biogeco2_mira_c13007___LPFLVSIDLSQNKFTGPIPAELYNCTYLNILRLNGNQLTGAIPWELTRLDRLKDFNVANNKLTGNIPSFPHNISASSFQGNP
B8LM41__________________LPYLVTIDLSQNEFTGSIPAELHNCTYLNILRLNGNQLTGEIPWQLSRLDRLTELNVANNKLTGYIPSLEHNMSASYFQNNP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain