SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene15562

Length: 350 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene15562
CACTACAGCGGCCACGCACTCGCGTTCGCCTGCATGAGTCCTCCGGCTATGATGAGTGTATCGTCCCATGCGATTTCAATCTTCTTACAGATGAGGACTTCAGGGTTATAGTGAATAAGGTGCCTCTGGGGACAAGTTTCACCATGGTGTCCGACTCCTGTCACAGCGGAGGTCTAATTGACAAAGAGAAGGAGCAAATCGGACCTGCTCATTCCAGATCATTAACAGATACAGAAGCATCAGCCCAACATTCTTCCAAGAGCAAGTTCTTGCCCTTGGGCGCGTTACTGGAAGTCTTAAGAGAAAAGACAGGCGAAGATGAAATGGAGGCAGATAAAATTAATATTGCC

Ace file of the UniGene biog2_v2.0_unigene15562 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene29643	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00656, Peptidase_C14, Caspase domain	-	-	6.0e-27	29%
FL-Next	tr=Metacaspase type II; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	35%
Blast2go	metacaspase type ii	-	-	0.0	60%

Source	GOs	Term	Type	e value	Identity
Blast2go	cysteine-type peptidase activity	GO:0008234	Molecular Function	0.0	60%
Blast2go	apoplast	GO:0048046	Cellular Component	0.0	60%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase C14, caspase catalytic	IPR011600	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q70VV0

Fln msg: Distance to subject end: 167 aas, your sequence is shorter than subject: 116 - 418

Fln protein: LQRPRTRVRLHESSGYDECIVPCDFNLLTDEDFRVIVNKVPLGTSFTMVSDSCHSGGLIDKEKEQIGPAHSRSLTDTEASAQHSSKSKFLPLGALLEVLREKTGEDEMEADKINIA

Protein Length: 117

Fln nts: CACTACAGCGGCCACGCACTCGCGTTCGCCTGCATGAGTCCTCCGGCTATGATGAGTGTATCGTCCCATGCGATTTCAATCTTCTTACAGATGAGGACTTCAGGGTTATAGTGAATAAGGTGCCTCTGGGGACAAGTTTCACCATGGTGTCCGACTCCTGTCACAGCGGAGGTCTAATTGACAAAGAGAAGGAGCAAATCGGACCTGCTCATTCCAGATCATTAACAGATACAGAAGCATCAGCCCAACATTCTTCCAAGAGCAAGTTCTTGCCCTTGGGCGCGTTACTGGAAGTCTTAAGAGAAAAGACAGGCGAAGATGAAATGGAGGCAGATAAAATTAATATTGCC

Fln Alignment:

biogeco2_mira_c12994___ESSGYDECIVPCDFNLLTDEDFRVIVNKVPLGTSFTMVSDSCHSGGLIDKEKEQIG---------PAHSR----------------------------------------SLTDTEASAQHSSKSKFLPLGALLEVLREKTGEDEMEADKI
Q70VV0__________________DDTGYDECIVPCDMNLITDDDFREFIDKVPRDCFCTIVSDSCHSGGLIERAKEQIGESTKDGDERPEHKKQGGFGFRDLLSESVHGAFESRGIHLPSRHEHKDRRESDEGETQEIEYHGKGRAKNRSLPLSTLIEILNEKTGRHDIDVGKI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain