SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene15514

Length: 282 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene15514
GAGAGTACTAGGTTGTTGGTGATCTTTCTATTTTTCTTCTGATATTGGTATTGGCAGAGGGAGTGAACGAATGGCTAATCTAAAGGCTCTAAAGAATAACGCAGCAGCTGCAATTTCTGCAAAGAAGCCAATGTGGCTGTATCCCAAGATACTTGCAGGTTTCAATCCTTCTGAGAGATGGGGTCACTCCACTTGTTACTCAGATGGCCATCTCTATGTCTTCGGGGGTTGCTGTGGAGGATTGCATTTCAGTGACGTTCTGACACTTGATTTGAGAACGAT

Ace file of the UniGene biog2_v2.0_unigene15514 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene29754	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	kelch repeat-containing protein [Danio rerio] gb\|AAW34264.1\| kelch repeat-containing protein [Danio rerio]	-	-	4.0e-05	39%
FL-Next	tr=Predicted protein; Hordeum vulgare var. distichum (Two-rowed barley).	-	-	0.0	76%
Blast2go	kelch motif family protein	-	-	8.88068e-29	82%

Source	InterPros	Term	Type	Identity
Sma3	Kelch repeat type 1	IPR006652	-	-
Sma3	Kelch repeat type 2	IPR011498	-	-
Sma3	Kelch-type beta propeller	IPR015915	-	-
Sma3	Galactose oxidase, beta-propeller	IPR015916	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: F2ECF4

Fln msg: Distance to subject end: 301 aas, your sequence is shorter than subject: 70 - 358

Fln protein: MANLKALKNNAAAAISAKKPMWLYPKILAGFNPSERWGHSTCYSDGHLYVFGGCCGGLHFSDVLTLDLRT

Protein Length: 71

Fln nts: GAGAGTACTAGGTTGTTGGTGATCTTTCTATTTTTCTTCTGATATTGGTATTGGCAGAGGGAGTGAACGA_-_ATGGCTAATCTAAAGGCTCTAAAGAATAACGCAGCAGCTGCAATTTCTGCAAAGAAGCCAATGTGGCTGTATCCCAAGATACTTGCAGGTTTCAATCCTTCTGAGAGATGGGGTCACTCCACTTGTTACTCAGATGGCCATCTCTATGTCTTCGGGGGTTGCTGTGGAGGATTGCATTTCAGTGACGTTCTGACACTTGATTTGAGAACGAT

Fln Alignment:

biogeco2_mira_c12939___MWLYPKILAGFNPSERWGHSTCYSDGHLYVFGGCCGGLHFSDVLTLDLRT
F2ECF4__________________MWLYPKVV-GFNPPERWGHSACFFQGLIYVFGGCCGGLHFSDVLTLNLET

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain