SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene15482

Length: 490 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene15482
ATGGGGACGCTTTGGAAATTTGCTCTGCCCAAACTCAAACTCTGCAAATTGACCAAGTCACTAAGATGGAGATCTCATACAGAAAACAAATTCTCTATAACAATCTGACTATCAGAAGCTTAATCTGCATTTCGTTGGTTCTGCTACTTTTAATTAGTAGAACTGCAGCTACCCAACAAGAGATCGAAGACGAGGATGATGATTTAGAGGATCTGGAAGAACTCGAAGAAATTGAGAACGATGATGGGAAAATCTCAGGGGCCGAGGCAGTGAGCAGAGCGCAGAAAATAGTTGCAGATCTCACAAACGACAATGCAGAGAGAATTTTGAGCTCCCATGAATATGTGCTATTGTTAGGTTACGCGTCCTGGTGTGCAAGAAGCTCTGAATTGATGCCAGAGTTTGCATTTGCAGCAACAGCGCTGAGTGATATGGGTAGGTCCTGTTTTGCTTGCAAAAATGGATGGGGATAGACACACTAAGGCTGCTT

Ace file of the UniGene biog2_v2.0_unigene15482 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2592	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Protein disulfide isomerase like protein n=3 Tax=Glycine max RepID=C4T848_SOYBN	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	42%
Blast2go	protein disulfide isomerase l-3b	-	-	71%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein disulfide-isomerase.	EC:5.3.4.1	-	0.0	71%

Source	GOs	Term	Type	Identity
Blast2go	transferase activity, transferring glycosyl groups	GO:0016757	Molecular Function	71%
Blast2go	protein disulfide isomerase activity	GO:0003756	Molecular Function	71%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	71%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	71%

Source	InterPros	Term	Type	Identity
Sma3		IPR012335	-	-
Sma3	Thioredoxin domain	IPR013766	-	-
Sma3		IPR017936	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWK0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 411 aas, No stop codon before M and low homology subject, your sequence is shorter than subject: 136 - 566

Fln protein: MEISYRKQILYNNLTIRSLICISLVLLLLISRTAATQQEIEDEDDDLEDLEELEEIENDDGKISGAEAVSRAQKIVADLTNDNAERILSSHEYVLLLGYASWCARSSELMPEFAFAATALSDMGRSCFACKNGWG*

Protein Length: 137

Fln nts: ATGGGGACGCTTTGGAAATTTGCTCTGCCCAAACTCAAACTCTGCAAATTGACCAAGTCACTAAG_-_ATGGAGATCTCATACAGAAAACAAATTCTCTATAACAATCTGACTATCAGAAGCTTAATCTGCATTTCGTTGGTTCTGCTACTTTTAATTAGTAGAACTGCAGCTACCCAACAAGAGATCGAAGACGAGGATGATGATTTAGAGGATCTGGAAGAACTCGAAGAAATTGAGAACGATGATGGGAAAATCTCAGGGGCCGAGGCAGTGAGCAGAGCGCAGAAAATAGTTGCAGATCTCACAAACGACAATGCAGAGAGAATTTTGAGCTCCCATGAATATGTGCTATTGTTAGGTTACGCGTCCTGGTGTGCAAGAAGCTCTGAATTGATGCCAGAGTTTGCATTTGCAGCAACAGCGCTGAGTGATATGGGTAGGTCCTGTTTTGCTTGCAAAAATGGATGGGGATAGACACACTAAGGCTGCTT

Fln Alignment:

biogeco2_mira_c12895___SGAEAVSRAQKIVADLTNDNAERILSSHEYVLLLGYASWCARSSELMPEFAFAATAL
A9NWK0__________________AGSDAPAVDEKDVAVLKESNFSDIVSKNRYVLVEFYAPWCGHCQRLVPEYAAAATEL

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
253	33		66		0.997453
268		33	66		0.997452
269	66	33			0.997452
270		33	66		0.997452
271	33			66	0.997453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain