SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene15413

Length: 249 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene15413
CAGGCGGTTGGAGCTTTGGATTGCGGACCGGGTGGTGCTGCCGGTGGAGAACTCACTTGGCGGAAACATCCACCACAACTATGATATGCTCCTCTGCCACAAGCTTCAATTTGTGGACGAGGTGCAGTTGCCCGTGCACCACTGTCTAATGGCGCTCCCGAGCACGAGGAAGGAAGATGTGCGGCGCGACCAACCACCCGCAGGCCCTTGCCCAGTGCGAGCACACGATTTTGAAGCTCATCGGCCAGG

Ace file of the UniGene biog2_v2.0_unigene15413 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene64877	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative chorismate mutase/prephenate dehydratase [Arabidopsis thaliana]	-	-	2.0e-23	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Blast2go	arogenate dehydratase prephenate dehydratase chloroplastic-like	-	-	1.19098e-25	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Arogenate dehydratase.	EC:4.2.1.91	-	1.19098e-25	81%

Source	KEGGs	Term	e value	Identity
Blast2go	Phenylalanine, tyrosine and tryptophan biosynthesis	00400	1.19098e-25	81%
Blast2go	Biosynthesis of phenylpropanoids	01061	1.19098e-25	81%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	1.19098e-25	81%
Blast2go	Biosynthesis of plant hormones	01070	1.19098e-25	81%
Blast2go	Metabolic pathways	01100	1.19098e-25	81%
Blast2go	Biosynthesis of secondary metabolites	01110	1.19098e-25	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	tyrosine biosynthetic process	GO:0006571	Biological Process	1.19098e-25	81%
Blast2go	L-phenylalanine biosynthetic process	GO:0009094	Biological Process	1.19098e-25	81%
Blast2go	response to low fluence blue light stimulus by blue low-fluence system	GO:0010244	Biological Process	1.19098e-25	81%
Blast2go	arogenate dehydratase activity	GO:0047769	Molecular Function	1.19098e-25	81%
Blast2go	chloroplast	GO:0009507	Cellular Component	1.19098e-25	81%
Blast2go	cytosol	GO:0005829	Cellular Component	1.19098e-25	81%
Blast2go	response to karrikin	GO:0080167	Biological Process	1.19098e-25	81%

Source	InterPros	Term	Type	Identity
Sma3	Prephenate dehydratase	IPR001086	-	-
Sma3	Amino acid-binding ACT	IPR002912	-	-
Sma3	Prephenate dehydratase, conserved site	IPR018528	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQ13

Fln msg: Separated hits, possible frame ERROR between 187 and 192, Distance to subject end: 179 aas, your sequence is shorter than subject: 83 - 443

Fln protein: RRLELWIADRVVLPVENSLGGNIHHNYDMLLCHKLQFVDEVQLPVHHCLMALPSTRKEDVRxxxNHPQALAQCEHTILKLIGQ

Protein Length: 84

Fln nts: CAGGCGGTTGGAGCTTTGGATTGCGGACCGGGTGGTGCTGCCGGTGGAGAACTCACTTGGCGGAAACATCCACCACAACTATGATATGCTCCTCTGCCACAAGCTTCAATTTGTGGACGAGGTGCAGTTGCCCGTGCACCACTGTCTAATGGCGCTCCCGAGCACGAGGAAGGAAGATGTGCGGCGxxxxxxCAACCACCCGCAGGCCCTTGCCCAGTGCGAGCACACGATTTTGAAGCTCATCGGCCAGG

Fln Alignment:

biogeco2_mira_c12814___LELWIADRVVLPVENSLGGNIHHNYDMLLCHKLQFVDEVQLPVHHCLMALPSTRKEDVRRxxNHPQALAQCEHTILKLIG
C0PQ13__________________VELWVADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLRVHHCLMALPGTRKEDLRRxxSHPQALAQCEHTISKLVG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain