SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene15405

Length: 525 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene15405
GCATATGAAATTCCAAAAGTTCCAGTACCAACAAGAGCTGTCCAAGTCTCTGTTTCAGCATCAACTGAGTTTGAGGCAATGGCGGAGTCTAGTTATGCAAGAGCAATGCAGCTGGCTGCACCTGTTTCATCATCATCAGATACACAGTTTTCCATCACTGATGGTATCAAGCTACGATTGGATGGGGTACAAAAGAAATGGGGTCGACCAACATATACTCCCACTTCATCAGTATCTCCTCCGGCCAACACAGACAAGTCCAGTAATGGGACACATCAAGGTATACTTGGTGGACCCATCACTATGCAAAACAAGGAGAGCTCATATGAGTCGAGACAAATCGATCGAAGGCAACAGGCTGAACCCTCTATAGAGAAGCAGAAACTTGCTGCTTCTTTATTTGGATCATCTTCTGCGAAAACTGACAAGAGAGGTGCAGTAGCCAAAGTTCCTAAACCAGTTGATAAGAAGAATAATCCTGTGCGTTCAGAGAAGAGCCAGACAGTTTCCAAAGTTTCTTCTCAT

Ace file of the UniGene biog2_v2.0_unigene15405 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene726	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	AP-4 complex subunit epsilon [Arabidopsis thaliana] sp\|Q8L7A9.1\|AP4E_ARATH RecName: Full=AP-4 complex subunit epsilon; AltName: Full=AP-4 adapter complex subunit epsilon; AltName: Full=Adapter-related protein complex 4 subunit epsilon; AltName: Full=Epsil	-	-	53%
FL-Next	sp=AP-4 complex subunit epsilon; Arabidopsis thaliana (Mouse-ear cress).	-	-	40%
Blast2go	ap-4 complex subunit epsilon-like	-	-	69%

Source	GOs	Term	Type	Identity
Blast2go	vesicle-mediated transport	GO:0016192	Biological Process	69%
Blast2go	intracellular protein transport	GO:0006886	Biological Process	69%
Blast2go	clathrin binding	GO:0030276	Molecular Function	69%
Blast2go	membrane coat	GO:0030117	Cellular Component	69%

Source	InterPros	Term	Type	Identity
Sma3	Clathrin/coatomer adaptor, adaptin-like, N-terminal	IPR002553	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Adaptor protein complex AP-4, epsilon subunit	IPR017109	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8L7A9

Fln msg: Distance to subject end: 112 aas, your sequence is shorter than subject: 175 - 938

Fln protein: AYEIPKVPVPTRAVQVSVSASTEFEAMAESSYARAMQLAAPVSSSSDTQFSITDGIKLRLDGVQKKWGRPTYTPTSSVSPPANTDKSSNGTHQGILGGPITMQNKESSYESRQIDRRQQAEPSIEKQKLAASLFGSSSAKTDKRGAVAKVPKPVDKKNNPVRSEKSQTVSKVSSH

Protein Length: 176

Fln nts: GCATATGAAATTCCAAAAGTTCCAGTACCAACAAGAGCTGTCCAAGTCTCTGTTTCAGCATCAACTGAGTTTGAGGCAATGGCGGAGTCTAGTTATGCAAGAGCAATGCAGCTGGCTGCACCTGTTTCATCATCATCAGATACACAGTTTTCCATCACTGATGGTATCAAGCTACGATTGGATGGGGTACAAAAGAAATGGGGTCGACCAACATATACTCCCACTTCATCAGTATCTCCTCCGGCCAACACAGACAAGTCCAGTAATGGGACACATCAAGGTATACTTGGTGGACCCATCACTATGCAAAACAAGGAGAGCTCATATGAGTCGAGACAAATCGATCGAAGGCAACAGGCTGAACCCTCTATAGAGAAGCAGAAACTTGCTGCTTCTTTATTTGGATCATCTTCTGCGAAAACTGACAAGAGAGGTGCAGTAGCCAAAGTTCCTAAACCAGTTGATAAGAAGAATAATCCTGTGCGTTCAGAGAAGAGCCAGACAGTTTCCAAAGTTTCTTCTCAT

Fln Alignment:

biogeco2_mira_c12805___AYEIPKVPVPTRAVQVSVSASTEFEAMAESSYARAMQLAAPVSSSSDTQFSITDGIKLRLDGVQKKWGRXXXXXXXXXXXPANTDKSSNG--THQGILGGPITMQNKESSYESRQIDRRQQAEPSIEKQKLAASLFGSSSAKTDKR
Q8L7A9__________________AYELPKPSVPPQA-------SNELVPVPEPSYYSESH--QPISTSLVSERESSE-IKLRLDGVKQKWGRPSYQSTTAAS--STTPQAANGISTHSDA-GVGSSSSKPRSSYEPK----KPEIDP--EKQRLAASLFGGSSSRTDKR

SSRs (tot: 1)

Start position	End position	Sequence	Length
388	399	TGA TGA TGA TGA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain